Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0212 ATGTCTTCTGATAGTGATATCTACACTATTGATATTTCTTTCCACACACATTCAAGTCCAAACATAGTCTCTTATGATCCTTATTACCCTTCCAATTACATTGAAGAAGTTCAAGAGGATTTGAACAATTCTCTTGACTCATTTTCCTCTTCCTTTTCATTTTCTTCCCCAATGAGTGAGCTTGGAAATTTCTCTGCTTTGGATGGGTCTAGTTTGAAAACTGTTGAATGTCAAATGGGTGTAGATTACACCTACCATCAGAACTTTCTTCCTCACAGTTGCAGTGGTTCTGAAACTGAAAGTGCATCCAAGTTAATGCAGAGGAGCTACAGCTGTAACAATTTTCATCAGAAACATGATTTTCCTTTTGAAGCTTACCATAACACACACATGGATTCCCCAAATTTTCAATGGCGTGAATTCAGCTCCCCTGAAAACAGTTTCTTCACCGGACAAATACGAAGGGCTTGCAGTGCAGGAGATTTGCAGAACATGGCAACACCTGGGTCTCAAATGGATGAAGCAAACTTCAAAGTACGGCGTTACAGTTTGGAAGAAAGAAAAGAAAAAATCTCTAGGTACAGAGCCAAGAGAAGCCGAAGGAAGTTCAACAAGATTATTAAGTATGCATGCAGAAAGACACTAGCCGACAATCGAACACGCATACGTGGCAGATTCGCACGTAACGACGAAGAAACCAACGAGATTCCAAAACCTCTATGGTCAAAAACAGAACAATATCATGAAGACGAGTTCTGGGTTGATCTCATTGAAGGGTTAAATGACGAGCTCCTCTACTAA 801 0.4007 MSSDSDIYTIDISFHTHSSPNIVSYDPYYPSNYIEEVQEDLNNSLDSFSSSFSFSSPMSELGNFSALDGSSLKTVECQMGVDYTYHQNFLPHSCSGSETESASKLMQRSYSCNNFHQKHDFPFEAYHNTHMDSPNFQWREFSSPENSFFTGQIRRACSAGDLQNMATPGSQMDEANFKVRRYSLEERKEKISRYRAKRSRRKFNKIIKYACRKTLADNRTRIRGRFARNDEETNEIPKPLWSKTEQYHEDEFWVDLIEGLNDELLY* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0212 266 ProSiteProfiles CCT domain profile. 187 229 IPR010402 GO:0005515
Mal6g0212 266 Pfam CCT motif 187 229 IPR010402 GO:0005515
Mal6g0212 266 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 262 IPR045281 GO:0009909
Mal6g0212 266 PANTHER CCT MOTIF FAMILY PROTEIN 29 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0212 Mal-Chr6 3031121 3032442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0212 159 235 C2C2-CO-like Transcription Factor Family AT5G24930 41.558 7.75e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal6g0212 CCT 6.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0212 - - mtr:MTR_5g010120 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0212 6 3031121 3032442 Mal6g0212 6 3031121 3032442 ECH
Mal6g0212 6 3031121 3032442 Mal7g4956 7 118371302 118373022 PCT