Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0162 ATGAATATTTTGAACTCATCATTTGCCGAATACTCAGACACTTCTTCATCGGAAAAAAGTTCTTCAGAAGTGATTTTGGCATCAACTAAGCCAAAGAAGAGAGCAGGGAGAAGAGTGTTCAAGGAGACAAGGCATCCTGTGTATCAAGGAATACGACGTAGGAACAATAACAAGTGGATTTGTGAAATGAGAGTTCCTAATGTTAATGTTAACAAAAACAATATTAAGTCAAGGATTTGGCTTGGAACATATCCAACGCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTGCTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCGGACTCGGCATGGCGGTTGACGTTGCCGGAGTCAAATGATGCGGTGGAGATAAGGAGGGCGGCGATGGAGGCTGCTAAAATGTTTGCGGTTGAAGAGAACCATGAATTGGTTATGGATATGGAAGATTCTTCCAATAAGAATGTGCTAGAAGTTCAAGTTCCGGTTCTGTCGTCAGAATTTGAAGACATGCATGATTTGCTTCTGAGTATTGCTAATGAGCCTTTACGTTCTCATCCTCCTTCTCCAACAAATTATTATGGTAGTAACTGGGATGACATTGAGTTATTTGACACTCCATTAGTTTCATTGTGGAACTTCTCAATTTGA 660 0.4076 MNILNSSFAEYSDTSSSEKSSSEVILASTKPKKRAGRRVFKETRHPVYQGIRRRNNNKWICEMRVPNVNVNKNNIKSRIWLGTYPTPEMAARAHDVAALALKGKSACLNFADSAWRLTLPESNDAVEIRRAAMEAAKMFAVEENHELVMDMEDSSNKNVLEVQVPVLSSEFEDMHDLLLSIANEPLRSHPPSPTNYYGSNWDDIELFDTPLVSLWNFSI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0162 219 Pfam AP2 domain 46 103 IPR001471 GO:0003700|GO:0006355
Mal6g0162 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 219 - -
Mal6g0162 219 Gene3D AP2/ERF domain 47 112 IPR036955 GO:0003700|GO:0006355
Mal6g0162 219 ProSiteProfiles AP2/ERF domain profile. 47 111 IPR001471 GO:0003700|GO:0006355
Mal6g0162 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 219 IPR045277 GO:0003700
Mal6g0162 219 SMART rav1_2 47 117 IPR001471 GO:0003700|GO:0006355
Mal6g0162 219 CDD AP2 48 113 IPR001471 GO:0003700|GO:0006355
Mal6g0162 219 SUPERFAMILY DNA-binding domain 47 113 IPR016177 GO:0003677
Mal6g0162 219 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Mal6g0162 219 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0162 Mal-Chr6 2318158 2318817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0162 23 139 AP2-EREBP Transcription Factor Family AT1G12610 70.085 1.43e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g0162 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0162 - - mtr:MTR_5g010940 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1988 1 26085662 26086285 Mal6g0162 6 2318158 2318817 ECH
Mal6g0162 6 2318158 2318817 Mal6g0162 6 2318158 2318817 ECH