Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0161 ATGAATTTCTTCATGTCATCATTTAGCGACTACTCAGACAATTCTTCTTCTTCAGAAACAAGTTCATCAAGCCGTACAAGTACTTCTGAAGTGATTTTAGCATCTGCTAGGCCAAAGAAAAGAGCAGGGAGAAGAGTGTTTAAGGAGACAAGACATCCAGTGTACCGTGGAGTACGACGTAGGAACAATAACAAGTGGGTTTGTGAGATGAGAGTTCCTAATAGTTATAACAAAAACAATAATATTAAGTCAAGGATTTGGCTTGGAACATATCCAACACCTGAAATGGCTGCACGTGCACACGATGTTGCTGCACTTGCTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGACTCAGCATGGCGATTGAGGTTGCCGGAGTCCAATGATGCGGTGGAGATAAGGAGAGCAGCGATGGAGGCTGCTCAGCTGTTTGCGGCTGAGGACATGTACAAGCAGGAATATACCGTTGAAGAACATATTCCGGCGGCCGCGGCGGAATTTGAATTTGAAGACATGCAAGATTTACTTTTGAATATTGCGAATGAGCCTTTACGTTCTGCTCCTCCTTCCCCAACAAATTATGGTAGCTATAATTGGGGTGATATAGAGATATTTGACACTCAAGTTTCACTGTGGAGCTTTTCGATTTGA 657 0.4262 MNFFMSSFSDYSDNSSSSETSSSSRTSTSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNSYNKNNNIKSRIWLGTYPTPEMAARAHDVAALALKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAAQLFAAEDMYKQEYTVEEHIPAAAAEFEFEDMQDLLLNIANEPLRSAPPSPTNYGSYNWGDIEIFDTQVSLWSFSI* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0161 218 CDD AP2 55 120 IPR001471 GO:0003700|GO:0006355
Mal6g0161 218 SMART rav1_2 54 124 IPR001471 GO:0003700|GO:0006355
Mal6g0161 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 218 IPR045277 GO:0003700
Mal6g0161 218 SUPERFAMILY DNA-binding domain 54 120 IPR016177 GO:0003677
Mal6g0161 218 MobiDBLite consensus disorder prediction 1 33 - -
Mal6g0161 218 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Mal6g0161 218 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Mal6g0161 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 218 - -
Mal6g0161 218 MobiDBLite consensus disorder prediction 1 44 - -
Mal6g0161 218 Pfam AP2 domain 53 110 IPR001471 GO:0003700|GO:0006355
Mal6g0161 218 Gene3D AP2/ERF domain 54 119 IPR036955 GO:0003700|GO:0006355
Mal6g0161 218 ProSiteProfiles AP2/ERF domain profile. 54 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0161 Mal-Chr6 2314107 2314763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0161 30 216 AP2-EREBP Transcription Factor Family AT1G63030 48.677 1.31e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g0161 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0161 - - mtr:MTR_5g010940 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0161 6 2314107 2314763 Mal6g0161 6 2314107 2314763 ECH
Mal5g3955 5 109106741 109107457 Mal6g0161 6 2314107 2314763 PCT