Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0150 ATGATCCGAACAGAAAACGGGTCGGGTCGTCGGATATTGAATTTCCCGGCGGTTCATCCATGTGTAAACATTGCTTCTTCCACCCTTCTCTCTTCCCTCATCAATCTCTCCAACGAGATTTCCAATTTCCAACACAAATTCTTCTCTTCCAACAAACGAAATGCGAGAAACGCAATTCGTTTGATTGGTCTTCTTCAATCCTCTCTCCATGAGATCCGAGATAATCATTCAAATCTTCCGGCTCCGGTGACCCTTTGTTTTTCTGAGCTTCATTTCATCTTCCAGAAGCTTTTTTTCTTGATGGAAGGTTTGACCTGTGAAGGTGGTAGGTTGTTTATGTTGATGGAATCGGATCGGGTTGCGTCGATGTTTCGGGACTTGTTTGGATCCGTTGCAAATGCACTTGATGTATTGGATTTTGATTCTGTTGAGGTGGGTTTGGAAGGTAAAGAGGAGGTTTTGTTGGTGATGAAGCAAGTGAGAGAGGGAAGGTTTGATTTCGAGGTTGATGATGAAGAGGTTGTGATGTGTGTTATGAAGGTTTTGAACCTGTTTGAGAAAAGGGTTGTTCCAAATAAGATGGATTTGAAGAGGGTTCTTGATTATATTGGGGTCTGTGGGTGGAGTGAGATTAGTAAAGAGGTGAAATTTTTGGATAGTGAAATTGGGTTTGAGTGGTTGAATGATGAAAAGAGAAAGGTGGGTTTTTTGAGTAGTTTGGTGGGGTTTATGAGTTATTGTAGATGTGTGGTGGTGAAAGTTGTGTATTGTGAAGAGGGTAAAGGTATCAAGAAATTTGATACAAGAAGGGAAAGTGAGATGATTTTGAGTTGTTTGAACTCGGATGATCTTCGATGTCCAATCTCTTTGGAATTGATGAGTGATCCTGTGACTATAGAAACAGGTCATACTTATGATCGTTCATCAATTCTCAAATGGTTTAGAAGTGGAAATTCAACATGTCCAAAGACAGGTAAAAGTCTTAGCAGCATTGAATTGGTACCTAATTTGGTAGTAAGGAGGTTGATTCAGCAATATTGTAATGTCAATGGAATTGCTTTTGCTGATTCGAGTCGTCGGAGTCGCGACATTACTAGGACAGAGCAGCCTGGAAGTGTGGCGGCCGAGGGAGCAATGAAGCTATTGGCTGGTTTTCTTTGTAGAAGTCTTGACAATGGAAATGTGGAACAGAAGAACCATGCTGCATTTGAGGTAAGGGTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTTGAAGCTGGTTCAGTTCCTCTTTTGTTGTTATTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATGCTATTGCAGCCCTTTTAAACCTCTCAAAATACACCAAAAGTAGAAGTGAGATGGTTGAGAATTGGGGATTAGAAATGATTGTTGGTGTCTTAAACAAAGGGATAAAGATTGAAGCAAAACAACATGCTGCAGCAGTGTTGTTTTACCTTGCTTCAAACCCTGAACATGCCAACTTAATAGGTGAAGAGCCAGAAGCAATTCCCTCATTGATCAGTCTCATCAAAGATGACAACAATCGAAGTGTAAAGAATGGTTTGGTCGCAATTTTTGGCCTCCTCAAACACCATGAAAATCACAAAAGGATACTTGCTGCTCAAGCAATTCCTTTGTTAGTTAACATCTTAAAAGCATGTGAAAAAGAAGACCTTGTTACAGACTCACTAGCAATTCTAGCAACTCTTGCAGAGAAAAGTGATGGAACATTGGAAATCCTTCGTTTCGGAGCTTTGCACGTAGCTGTTGAAGTTATGAGTTCTTCATCCACAACTTCAAGATTAGGGAAAGAGCATTGTGTGTCATTGTTACTTTCTCTATCAATGAATGGTGGAGAAAATGTGGTTTCTCATTTAGTGAAGAGTTCTTCTCTTATGGAATCATTATATTCACAACTAAGTGAAGGAACTGCTAGAGCAAGCAAAAAGGCAAGTTCTCTCATAAGGGTCCTCCATGATTTTTATGAAAGGAGATCCTCTAACTACAGGACATCGGTTATTCCACGAGAACAATTCATACATGTATGGTAA 2070 0.4 MIRTENGSGRRILNFPAVHPCVNIASSTLLSSLINLSNEISNFQHKFFSSNKRNARNAIRLIGLLQSSLHEIRDNHSNLPAPVTLCFSELHFIFQKLFFLMEGLTCEGGRLFMLMESDRVASMFRDLFGSVANALDVLDFDSVEVGLEGKEEVLLVMKQVREGRFDFEVDDEEVVMCVMKVLNLFEKRVVPNKMDLKRVLDYIGVCGWSEISKEVKFLDSEIGFEWLNDEKRKVGFLSSLVGFMSYCRCVVVKVVYCEEGKGIKKFDTRRESEMILSCLNSDDLRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNSTCPKTGKSLSSIELVPNLVVRRLIQQYCNVNGIAFADSSRRSRDITRTEQPGSVAAEGAMKLLAGFLCRSLDNGNVEQKNHAAFEVRVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENAIAALLNLSKYTKSRSEMVENWGLEMIVGVLNKGIKIEAKQHAAAVLFYLASNPEHANLIGEEPEAIPSLISLIKDDNNRSVKNGLVAIFGLLKHHENHKRILAAQAIPLLVNILKACEKEDLVTDSLAILATLAEKSDGTLEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSMNGGENVVSHLVKSSSLMESLYSQLSEGTARASKKASSLIRVLHDFYERRSSNYRTSVIPREQFIHVW* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0150 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Mal6g0150 689 Pfam Armadillo/beta-catenin-like repeat 416 451 IPR000225 GO:0005515
Mal6g0150 689 Pfam U-box domain 282 348 IPR003613 GO:0004842|GO:0016567
Mal6g0150 689 PANTHER U BOX DOMAIN-CONTAINING 4 679 - -
Mal6g0150 689 Gene3D - 355 676 IPR011989 -
Mal6g0150 689 SUPERFAMILY RING/U-box 282 354 - -
Mal6g0150 689 CDD RING-Ubox_PUB 284 326 IPR045210 -
Mal6g0150 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Mal6g0150 689 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mal6g0150 689 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mal6g0150 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 679 - -
Mal6g0150 689 SUPERFAMILY ARM repeat 385 664 IPR016024 -
Mal6g0150 689 SMART arm_5 453 494 IPR000225 GO:0005515
Mal6g0150 689 SMART arm_5 495 536 IPR000225 GO:0005515
Mal6g0150 689 SMART arm_5 537 578 IPR000225 GO:0005515
Mal6g0150 689 SMART arm_5 411 452 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0150 Mal-Chr6 2116201 2118270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0150 1 689 U-box Gene Family AT1G10560 43.706 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0150 - - gmx:100795816 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0150 6 2116201 2118270 Mal6g0150 6 2116201 2118270 ECH