Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0117 ATGTCAACACTAAACCATCTTTTCGATCTTCCAGAACAGATATGTTATGTACAATGTGGATTCTGTAATACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTACTCATCTTGAGCAAAAAGAAAGTAGTAGTCCTGATGAAGATGCAAACAAAACTTTGAACAGTAATACCAGTGCATCATTGATGACTTATTCTGATTGTGAGGAAGATGATGTAATTCCAATCAGCAATGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTAAAAACCCTGATATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTGCCCCCCAGCTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAATTTGTGGATCTTGATTCCCAAGTGGACCCTCATGATGCTGAGGTGAATGAAGAAGAGCAAGGTTTCCGTGGAAGAAAGGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 654 0.3991 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQKESSSPDEDANKTLNSNTSASLMTYSDCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCPPAQCKGDEESCSQTDQFVDLDSQVDPHDAEVNEEEQGFRGRKVPRNSILERTPFE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0117 217 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Mal6g0117 217 MobiDBLite consensus disorder prediction 185 217 - -
Mal6g0117 217 PANTHER AXIAL REGULATOR YABBY 4 1 181 - -
Mal6g0117 217 SUPERFAMILY HMG-box 111 165 IPR036910 -
Mal6g0117 217 Gene3D High mobility group box domain 112 186 IPR036910 -
Mal6g0117 217 MobiDBLite consensus disorder prediction 185 210 - -
Mal6g0117 217 CDD HMGB-UBF_HMG-box 122 165 - -
Mal6g0117 217 Pfam YABBY protein 11 165 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0117 Mal-Chr6 1712976 1715425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0117 2 217 C2C2-YABBY Transcription Factor Family AT1G23420 56.828 1.43e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mal6g0117 YABBY 3.2e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0117 K25796 - gmx:100804172 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0117 6 1712976 1715425 Mal6g0117 6 1712976 1715425 ECH