Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0105 ATGAGGTTGAGCAGCAATAAGACGATATATGCCAAGTGGCTATCTCTAGCAGCAGCAACAAGAAGAAGAAGAAGAAGAAGCAGTTCCAATCCAAATCCGCGTTTTAGCGTCATCACGGTGATGGAAGAAATGTACGGAGTACCAACAACGGTGGAGTACGGCGACAAATCCATGATGACGCCGGAGAATCTAATCTTCCCGGCGGACTACAACAGTTTCCTCATGTCCACCACTTCATCAACCAACAGAATTCCCATGTTCGGATCCGACGTTATCTTCACGGCGGCGGCTGAACCTTCTTCCGCCGGAATTCAAGATGACGTGGCATCTAGTGTTATGAAAGCTAAAATCGCTTCTCATCCTTATTACCCTCGTCTTCTTCAAGCTTATATCGATTGTCAAAAGGTCGGTGCTCCTCCTGAAATCGCAAGTTTGTTAGAGGAAATTCGAAGAGAAAATGATATATGCAAAAGAGACGTTGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAAGTTACTGTGACATGCTTGTGAAGTATAAATCAGACCTTACTCGTCCTTTTGATGAAGCTACAACGTTTCTGAACAAGATCGAAACGCAACTCAGTCATCTCTGCACTGGTGGTGCTGTTGCTTCAGTTCCAACTGCTTCTGATGATGGTGGTGCATCTTCAGACGAAGATCTTAGTATAGGAGATGGTGATGTTCAAGATGGACAATCAAGAGGAGAAGATCGTGAGCTCAAAGATAAGCTTTTACGCAAATTTGGGAGTCATATTGGTACTTTGAAATTGGAGTTTTCAAAAAAGAAAAAGAAGGGTAAGCTTCCAAAAGAAGCAAGACAAATACTACTTCAATGGTGGAATGTTCATTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTTGCTAAGTCAACAGGGTTAGACCAGAAACAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATTTTACTGGACGGTTTCTTACTGAAGAATGA 1071 0.4174 MRLSSNKTIYAKWLSLAAATRRRRRRSSSNPNPRFSVITVMEEMYGVPTTVEYGDKSMMTPENLIFPADYNSFLMSTTSSTNRIPMFGSDVIFTAAAEPSSAGIQDDVASSVMKAKIASHPYYPRLLQAYIDCQKVGAPPEIASLLEEIRRENDICKRDVVVSTCFGADPELDEFMESYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGGAVASVPTASDDGGASSDEDLSIGDGDVQDGQSRGEDRELKDKLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQILLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLTEE* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0105 356 Pfam KNOX2 domain 166 212 IPR005541 GO:0003677|GO:0005634
Mal6g0105 356 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Mal6g0105 356 SUPERFAMILY Homeodomain-like 274 346 IPR009057 -
Mal6g0105 356 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Mal6g0105 356 SMART KNOX1_2 111 155 IPR005540 GO:0003677|GO:0005634
Mal6g0105 356 SMART KNOX2_2 162 213 IPR005541 GO:0003677|GO:0005634
Mal6g0105 356 MobiDBLite consensus disorder prediction 222 253 - -
Mal6g0105 356 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Mal6g0105 356 Pfam KNOX1 domain 113 154 IPR005540 GO:0003677|GO:0005634
Mal6g0105 356 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 86 354 - -
Mal6g0105 356 SMART HOX_1 275 340 IPR001356 GO:0003677
Mal6g0105 356 Pfam ELK domain 253 274 IPR005539 GO:0003677
Mal6g0105 356 Gene3D - 272 346 - -
Mal6g0105 356 CDD homeodomain 285 337 IPR001356 GO:0003677
Mal6g0105 356 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Mal6g0105 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 354 - -
Mal6g0105 356 SMART ELK_2 253 274 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0105 Mal-Chr6 1531259 1543950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0105 41 356 Homeobox Transcription Factor Family AT1G23380 65.257 6.12e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal6g0105 KNOX2 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0105 - - gmx:100794719 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0105 6 1531259 1543950 Mal6g0105 6 1531259 1543950 ECH