Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0088 ATGGCTTTTCCAGATGATATTCCAACCTGTAAGATGTCACCGCCACAATTCACTTCATTGAACAACAATGACTTTGAATCAAATTCAACATTGGATCATCCCCATTCCTTCAATAGGGCAACAACTTCTCATTCCAATGCATTGATATGCCCTCCTTCCAATGCATTGATATGCCCTCCTTCAAGGATGACCTTGCCTCCATCAAACAGAGCAGGCCATATTTTCTACAAGACTCGAATTTGTTTTAAGTTCGGATTCGGTAAATGTATGAATGGTGGAAATTGTAACTATGCCCATGGGGTTGGTGATTTAAGACAACCACCACCAAATTTGAAGGAGCTAGTTGGTATGCAGAATGAAGATCAGTTGCAGCTGGGAAATAAGGCTGAAGATAAAAAAAATCATATACAAGATGAAACTGTGCAAGAAATATTACAATGGAGAGGAATGTCCCTATGGAGATAA 465 0.3935 MAFPDDIPTCKMSPPQFTSLNNNDFESNSTLDHPHSFNRATTSHSNALICPPSNALICPPSRMTLPPSNRAGHIFYKTRICFKFGFGKCMNGGNCNYAHGVGDLRQPPPNLKELVGMQNEDQLQLGNKAEDKKNHIQDETVQEILQWRGMSLWR* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0088 154 ProSiteProfiles Zinc finger C3H1-type profile. 75 102 IPR000571 GO:0046872
Mal6g0088 154 Gene3D - 70 107 - -
Mal6g0088 154 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 2 121 - -
Mal6g0088 154 PANTHER CCCH ZINC FINGER/TIS11-RELATED 2 121 IPR045877 GO:0003729
Mal6g0088 154 SUPERFAMILY CCCH zinc finger 73 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0088 Mal-Chr6 1264684 1265148 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g0088 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0088 - - mtr:MTR_4g113890 170.629