Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0062 ATGGATTTTGATGAAGATCAAGAAGAGGAACAAGAGGAAGAGTTATGTATGGGTGGTGGAGGAAGTTACGACTCTTTACCTAACTCATCAAGAGTTGTTAAGATGCCAGGTGGAACAGAACCTATCATGGTGACTCATCCACTCAGAAACATCATCAACAACAACAACAATGGAAACAGCAACATGGGTATTGTTGTTGGAAACGGAAAAGCAAGGTATAGAGAGTGTTTGAAGAATCATGCTGTTGGAATTGGTGGTCATGCTCTTGATGGTTGCGGCGAGTTTATGCCGGCAGGAAATGAAGGAACATTGGAATCACTAAAATGTGCTGCTTGTAACTGCCACCGTAACTTCCACCGAAAAGAGTCATCGGCAGACATTACTGCCGGTGACCCTTTTCTGTTGACACACCATCACCACCATCCACCACCTCCGCCGCAGTTCGCGGCATATTATCGAACTCCGGCGGGGTATTTGCATGTTTCTGGACAGCAGAGGACTGGGACACTTGCTTTACCTTCGACTTCCGGTGGCGGTGGAGGCACGCAGAGTACGAGGGAGGAGCAAGAAGATGTTTCGAATCCAAGTGGTGGTGGAAGTGGGTCGAGTAAGAAGAGGCATAGGACGAAATTCACGCAGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGTAATGAAACTGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 804 0.459 MDFDEDQEEEQEEELCMGGGGSYDSLPNSSRVVKMPGGTEPIMVTHPLRNIINNNNNGNSNMGIVVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGNEGTLESLKCAACNCHRNFHRKESSADITAGDPFLLTHHHHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREEQEDVSNPSGGGSGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNETGVKRHVLKVWMHNNKHTLGKKP* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0062 267 Gene3D - 189 264 - -
Mal6g0062 267 Pfam ZF-HD protein dimerisation region 71 123 IPR006456 -
Mal6g0062 267 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 122 IPR006456 -
Mal6g0062 267 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 204 260 IPR006455 -
Mal6g0062 267 MobiDBLite consensus disorder prediction 1 15 - -
Mal6g0062 267 MobiDBLite consensus disorder prediction 168 215 - -
Mal6g0062 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 54 266 - -
Mal6g0062 267 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 72 122 IPR006456 -
Mal6g0062 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 266 - -
Mal6g0062 267 SUPERFAMILY Homeodomain-like 194 265 IPR009057 -
Mal6g0062 267 MobiDBLite consensus disorder prediction 168 202 - -
Mal6g0062 267 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0062 Mal-Chr6 889915 890718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0062 69 263 ZF-HD Transcription Factor Family AT4G24660 53.333 5.00e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal6g0062 ZF-HD_dimer 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0062 - - gmx:100808910 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0062 6 889915 890718 Mal5g2993 5 88123730 88124425 PCT