Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0058 ATGGTTCGGGAGAAGATTCAGATAAAGAAGATCGAGAACGCAACGGCGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGATTGGTCAAAAAAGCTGAAGAACTCTCCGTTCTGTGTGATGCAGATGTTGCTCTCATCGTTTTCTCTTCTACTGGGAAACTCTTTGAATACTCAAACTTAAGCATGAGGGAAATACTTGAAAGACATCATTTGCACTCAAAGAATCTGGCAAAGCTGGAAGAACCGTCGCTAGAGTTGCAGCTAGTTGAAGACAGCAACTGTTCTAGATTGAGCAAGGAAGTTGCTCAGAAGAGCCATCAACTAAGGCAGATGAGGGGAGAAGATCTTGAAGGTTTGAATTTGGAAGAATTACAACAATTGGAGAGGTCTCTTGAAATTGGGTTGGGACGTGTAATTGAAACTAAGGGTGAGAAGATTATGATGGAGATCAATGATCTCCAAACAAAGGGAAGGCAACTGATGGAAGAGAATGACCGACTCAAGCGACATGTGGCGGACACATTTAATGGTAAAATGCTTGGAGGAGTTGAATCTGATGAAGGTCAATCTTCAGAATCGGTCACCAATGTTTACAATTCAACTGGTCCTCCCCTGGATTATGAGAGCTCAGACACCTCACTCAAATTGGGGCTTCCATATGCCGGCTGA 669 0.4335 MVREKIQIKKIENATARQVTFSKRRRGLVKKAEELSVLCDADVALIVFSSTGKLFEYSNLSMREILERHHLHSKNLAKLEEPSLELQLVEDSNCSRLSKEVAQKSHQLRQMRGEDLEGLNLEELQQLERSLEIGLGRVIETKGEKIMMEINDLQTKGRQLMEENDRLKRHVADTFNGKMLGGVESDEGQSSESVTNVYNSTGPPLDYESSDTSLKLGLPYAG* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0058 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 219 - -
Mal6g0058 222 Coils Coil 150 170 - -
Mal6g0058 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Mal6g0058 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Mal6g0058 222 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g0058 222 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g0058 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mal6g0058 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g0058 222 MobiDBLite consensus disorder prediction 186 208 - -
Mal6g0058 222 MobiDBLite consensus disorder prediction 178 212 - -
Mal6g0058 222 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0058 Mal-Chr6 771351 776565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0058 1 222 MADS-box Gene Family AT2G22540 66.250 3.93e-107 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal6g0058 K-box 8.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0058 - - gmx:100789126 339.347