Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0051 ATGGTTTTACTTCGACAGGGCATGCAGCATTTCCGAAATTACTATAACTCAGAAGCTCAAATGATGAGAAACAACTTTCCACGTTCTTTCATCTCACAAACATTCAAAAGCAGTTTCTCGAAGCAAAGATCGAAGGCGGAGAACAAATTACTGGCAGCTAAGAAACATAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACGCTCCGCAGTATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAATACTAGTGGAGACTATCAAGCAAGTGAAGGAGTTGAAGAAAAAAGCATCAAAACTAGAAGAAGATAGCCATGGTACCTCAAAGGAGATCAAGTTTCCAAGTGGGGCAGACAAATTGAATTTGGAAAAGTGTAATGATGAGGAGTGCCTAATCAAGGCTACATTGAGTTGTGAGGATAGGCCAGGATTGATGTCATCTATATCAAGAGCACTATTGTCAATGAAAGCCAAAGTTGTAAAGGTTGAGATGGTGACAGTTGGTGGAAGAACAAGAAGTGTGTTGTGGGTTCAAGGTGTTGAAAATGAAGGTTTGGGGATGCTAAAGAGTACTTTGAAAGTTGTTATGCATAAGCCAAGCTTTAAGATGAGGCGGTTTACTCAATAA 648 0.4028 MVLLRQGMQHFRNYYNSEAQMMRNNFPRSFISQTFKSSFSKQRSKAENKLLAAKKHSEAEKRRRMRINGQYDTLRSILPNLIKKDKASILVETIKQVKELKKKASKLEEDSHGTSKEIKFPSGADKLNLEKCNDEECLIKATLSCEDRPGLMSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENEGLGMLKSTLKVVMHKPSFKMRRFTQ* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0051 215 CDD ACT_UUR-ACR-like 142 192 - -
Mal6g0051 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 115 IPR036638 GO:0046983
Mal6g0051 215 SUPERFAMILY ACT-like 142 206 IPR045865 -
Mal6g0051 215 Coils Coil 90 117 - -
Mal6g0051 215 SMART finulus 57 106 IPR011598 GO:0046983
Mal6g0051 215 PANTHER TRANSCRIPTION FACTOR BHLH30 10 213 IPR045847 GO:0003700|GO:0006355
Mal6g0051 215 Gene3D - 51 120 IPR036638 GO:0046983
Mal6g0051 215 Gene3D - 139 211 - -
Mal6g0051 215 PANTHER TRANSCRIPTION FACTOR BHLH131 10 213 - -
Mal6g0051 215 Pfam Helix-loop-helix DNA-binding domain 55 100 IPR011598 GO:0046983
Mal6g0051 215 Pfam ACT domain 142 205 - -
Mal6g0051 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0051 Mal-Chr6 672473 673497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0051 50 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.604 1.91e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g0051 ACT_6 2.8e-05 CL0070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0051 - - gmx:102667782 291.967