Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0046 ATGGCTCGGGAGAAGATTAAGATAAAGAAGATCGAGAACGCAACGGCAAGGCAAGTAACGTTTTCAAAGAGAAGAAGAGGATTGGTCAAAAAGGCTGAAGAACTCTCTGTTCTCTGTGATGCGGATGTTGCTCTCATCGTTTTCTCTTCTACTGGCAAGCTCTTCGAATACTCCAACCTAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTGGCAAAGCTGGAAGAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGTTCTAGATTAAGCAAGGAAGTTGCTAAGAAAAGCCATCAACTAAGGCAGATGAGGGGAGAGGATCTTGAAGGTTTGAATTTGGAAGAATTACAACAATTGGAGAGGTCTCTTGAAATTGGGTTGGGTCGTGTAATAGAAAACAAGGGAGAGAAGATCATGATGGAGATCAATGATCTCCAAAGAAAGGGAAGGCAATTGATGGAAGAGAACGACCGACTAAAGCGACATGTTGCGGGCATGATTAACGACCAAATGCTAGAAGGTGAGGAATCTGAGAATGTGGTTAATGAAGGTCAGTCCTCAGAATCTATCACCAACGTTTACAACTCCATTGGTCCTCCCCAAGATTATGACAGTTCAGATACATCGCTCAAGTTAGGGTGA 666 0.4309 MAREKIKIKKIENATARQVTFSKRRRGLVKKAEELSVLCDADVALIVFSSTGKLFEYSNLSMREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEVAKKSHQLRQMRGEDLEGLNLEELQQLERSLEIGLGRVIENKGEKIMMEINDLQRKGRQLMEENDRLKRHVAGMINDQMLEGEESENVVNEGQSSESITNVYNSIGPPQDYDSSDTSLKLG* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0046 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g0046 221 Coils Coil 150 170 - -
Mal6g0046 221 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Mal6g0046 221 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mal6g0046 221 MobiDBLite consensus disorder prediction 187 221 - -
Mal6g0046 221 MobiDBLite consensus disorder prediction 180 221 - -
Mal6g0046 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Mal6g0046 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g0046 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal6g0046 221 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mal6g0046 221 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0046 Mal-Chr6 587611 590647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0046 1 221 MADS-box Gene Family AT2G22540 66.383 5.38e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal6g0046 K-box 5.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0046 - - gmx:100789126 327.791