Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0029 ATGGCTCGTGCTACTACTACTAATTCCAATAATAACTGGCTATCATTTTCACTTTCACCCATGGAAATGCCCCAGTTTGTTCAATATGACTCACCTTCATCCGTTACTACTAACTCCTCTCACCAAAATCATCATCACTACTTTCTTGATAACTTGTACACTCATAATGGGTGGGGAAACGGAACCACAAAAACAGAAGAACAAGAACAATCAATCTGGTTTATGAACTCATCATCTCAGAGTGTAAACCACGCTCCACCACCAAAGCTAGAAGATTTTCTAGGAGACAGTCAAACAGAAACCCAAGATTCTTCACTCACAAACATGTATGATCATCATCACTACTTCGGTGGGGACCACCAACAACACCACCAAGCCATGACTGGTTTTCAAGCTTTTTCAAACAACAACTCTGGCTCTGAAGTTGATGATTCTGGTTCCATAGGGAAATCAGGACAAGCTGCATGTGGGAATGAGTTTGGAACAACTCATTGTGTTGAGTCTGTGAATGAGTTTGCTTACTCCACCGCTGCCCCAGCAGCGGTGGGGGCTAATGGAACTCTGTCGCTTGGTGTTGCGCAGAGTTCCGAGGAAACTGCTATTGTTGCTGTTGCTACTGAGTCTGATAGCTCAAAGAAAATTGATACTTTTGGTCAAAGAACTTCAATTTACCGTGGTGTTACTAGGCATAGATGGACAGGAAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGGGAAGGTCAAGCCAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAAGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGGCCCACTGCTACCACCAACTTCCCTGTTTCCAATTATGCAAAGGAATTGGAAGAGATGAAACTTGTAACTAAGCAAGAATTCATTGCATCACTGCGAAGGAAGAGTAGCGGCTTTTCTAGAGGCGCTTCCATCTACAGGGGTGTTACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTTGCCGGCAACAAAGACTTGTACCTCGGAACATTTGCAACTGAGGAGGAAGCTGCAGAGGCATACGACATTGCAGCCATAAAATTCCGAGGCGCGAACGCGGTGACAAACTTTGAGATGAACAGATATGAAGTTGAAGCGATAATGAAGAGTTCACTTCCAGTTGGCGGGGCAGCTAAACGCCTGAAACGTTCTCTCGAATCAGAACAGAAGGCTTCTGCTGACAACAGCATTCAGCAGAACAACTCCCAACAATGTGCTGCAAACTTGAATAACAGCAGCAGCAGCATCAATTTCTCGGCCATTCATCATCAGCAACCAATGGCTTTAATCCCTTATGGGATTCCGTATGATTCAAATACGGCGTATTATCACCAAAACCTCTTTCAGCACTATCATGCCAATGAGGGCACTTCAGAATCAGCTGCAACAGGAGGACTCAATGCTATGCCTCCGACATCAGCTGCTGAGTTCTATCTATGGCCAAATCAGTCGTACTGA 1533 0.4494 MARATTTNSNNNWLSFSLSPMEMPQFVQYDSPSSVTTNSSHQNHHHYFLDNLYTHNGWGNGTTKTEEQEQSIWFMNSSSQSVNHAPPPKLEDFLGDSQTETQDSSLTNMYDHHHYFGGDHQQHHQAMTGFQAFSNNNSGSEVDDSGSIGKSGQAACGNEFGTTHCVESVNEFAYSTAAPAAVGANGTLSLGVAQSSEETAIVAVATESDSSKKIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYEVEAIMKSSLPVGGAAKRLKRSLESEQKASADNSIQQNNSQQCAANLNNSSSSINFSAIHHQQPMALIPYGIPYDSNTAYYHQNLFQHYHANEGTSESAATGGLNAMPPTSAAEFYLWPNQSY* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0029 510 SMART rav1_2 223 295 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 SMART rav1_2 325 389 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 ProSiteProfiles AP2/ERF domain profile. 325 383 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 ProSiteProfiles AP2/ERF domain profile. 223 289 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 PRINTS Ethylene responsive element binding protein signature 365 385 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 SUPERFAMILY DNA-binding domain 222 291 IPR016177 GO:0003677
Mal6g0029 510 SUPERFAMILY DNA-binding domain 324 384 IPR016177 GO:0003677
Mal6g0029 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 485 - -
Mal6g0029 510 Gene3D AP2/ERF domain 223 291 IPR036955 GO:0003700|GO:0006355
Mal6g0029 510 Gene3D AP2/ERF domain 325 385 IPR036955 GO:0003700|GO:0006355
Mal6g0029 510 CDD AP2 324 383 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 CDD AP2 222 291 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 Pfam AP2 domain 325 375 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 Pfam AP2 domain 223 281 IPR001471 GO:0003700|GO:0006355
Mal6g0029 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 10 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0029 Mal-Chr6 414459 418585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0029 78 510 AP2-EREBP Transcription Factor Family AT5G10510 56.420 1.12e-155 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mal6g0029 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0029 K09285 - gmx:100775390 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0029 6 414459 418585 Mal5g2965 5 87673475 87678844 PCT