Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0027 ATGCGGTGTTTCGTGATTGTAGCAGAGATTGAAAAGAGAAGGAAAAAGGAAGAGATGAAAAACCCAGAAATGGAATCAAAGTATAATAACAAAAAAGAGTTTTCAAGCGATGATGAAGCATCACCAAGAGCAATACTAGAAGCCCCTGTTTCAGGAACAGAGTCAGACAATAGTGGAAGCAGCAGTTTCACCTCTTACTCGCCGGAAACATCACCACCGCCGGAGGAGATTACGGTGGTAGGAAAATCAAATGGGAAAGAAAGTAACATGATGCAATGGAAATCAATGATTGGTGTTTTTAGGTTCAAGTCAGTGAGAAAATTATCAGCTATTCCTCTTCTTGCTGCTGCTAGCCACGATATTACTAGGAAAGGTTTGACTAAGAAATTGGCTAGGATTCGAAGTGCTGAAGAAAGTATTGATATTGATGCTATTCCCTCGAAACCTTCTTGGAGGAACTTTGATTATGCTGAGCTTGCTGCTGCTACTAATGATTTCAGTTCTGAGAACTTGATTGGAAAAGGTGGGCATGCTGAAGTATACAAAGGACACTTATCAGATGGTCAAGTTGTAGCAGTAAAGAGACTAATGAAGAATGACAAGGATTTCGCGGATAGAGCAGGCGATTTCTTAACAGAGCTTGGAATCATTGCACACGTTAATCACCCGAACGCTACACGCCTTGTCGGTTTTGGTATCGACCGCGGCCTCTACTTTGTCCTACAATTAGCACCATATGGAAGTCTTTCTTCTTTGTTATATGGTTCTGAATGTTTAGAGTGGAAGACAAGGTACAAGGTGGTTATCGGAGTAGCCGAGGGGTTGCAATATCTCCATCAAGATTGCCCGAGACGAATTATTCATAGGGACATCAAAGCCTCAAACATATTACTCAATGATAATTATGAAGCCGAGATATCAGATTTTGGACTGGCAAAGTGGCTTCCAAATAATTGGGCACACCATGTTGTTTTTCCTATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTACTTTATGCATGGTATTGTAGATGAGAAGACAGATGTATTCGCATTCGGCGTTTTATTACTCGAACTCATAACCGGTCGTCGTGCAGTTGATTCAGATAGTAAGCAAAGCCTTGTGATTTGGGCCAAGCCACTTCTTGACTCAAAGAATGTCAAAGAGCTAGCAGATCCTAGATTAGAAGATAAATATGATCCTACTGAAATGAAGCGTGCCATGGCGACTGCTTCCTTGTGCGTCCACCATTCATCCTCCAAGCGGCCATTCATGAAACAGGTTGCGCAACTACTGAAGGGTGAAGAAGCAATTATAGATTCCAAGCAAACTTCAGGTGCTTCTAAATCACTCTTGTTAGAGGCATGTGACTTAGAAGATTATACTTGCTCTAATTACTTGAAGGACCTCAACCGCCACAGGGAACTAGTCATGGAGTGA 1443 0.4193 MRCFVIVAEIEKRRKKEEMKNPEMESKYNNKKEFSSDDEASPRAILEAPVSGTESDNSGSSSFTSYSPETSPPPEEITVVGKSNGKESNMMQWKSMIGVFRFKSVRKLSAIPLLAAASHDITRKGLTKKLARIRSAEESIDIDAIPSKPSWRNFDYAELAAATNDFSSENLIGKGGHAEVYKGHLSDGQVVAVKRLMKNDKDFADRAGDFLTELGIIAHVNHPNATRLVGFGIDRGLYFVLQLAPYGSLSSLLYGSECLEWKTRYKVVIGVAEGLQYLHQDCPRRIIHRDIKASNILLNDNYEAEISDFGLAKWLPNNWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSDSKQSLVIWAKPLLDSKNVKELADPRLEDKYDPTEMKRAMATASLCVHHSSSKRPFMKQVAQLLKGEEAIIDSKQTSGASKSLLLEACDLEDYTCSNYLKDLNRHRELVME* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0027 480 SUPERFAMILY Protein kinase-like (PK-like) 149 433 IPR011009 -
Mal6g0027 480 ProSitePatterns Protein kinases ATP-binding region signature. 172 194 IPR017441 GO:0005524
Mal6g0027 480 MobiDBLite consensus disorder prediction 12 40 - -
Mal6g0027 480 Gene3D Phosphorylase Kinase; domain 1 126 240 - -
Mal6g0027 480 MobiDBLite consensus disorder prediction 12 85 - -
Mal6g0027 480 Coils Coil 7 27 - -
Mal6g0027 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Mal6g0027 480 SMART serkin_6 166 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0027 480 Gene3D Transferase(Phosphotransferase) domain 1 245 451 - -
Mal6g0027 480 ProSiteProfiles Protein kinase domain profile. 166 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0027 480 MobiDBLite consensus disorder prediction 51 72 - -
Mal6g0027 480 PANTHER OS08G0249100 PROTEIN 12 480 - -
Mal6g0027 480 Pfam Protein kinase domain 167 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal6g0027 480 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 12 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0027 Mal-Chr6 399408 404535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0027 139 463 Trihelix Transcription Factor Family AT5G38560 41.429 3.20e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mal6g0027 Pkinase 3.2e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0027 6 399408 404535 Mal5g2963 5 87620505 87624149 PCT