Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0025 ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCATAGTGATTCTGACGATGAACCCACTGATATTGACGATGAACCCAGTGATACCGAACCACTTCAATCAGATCCAGCCGATAAAAGCAAATACTACGTTGATGGTAATGCAGATGACAGTGACGACGATGACAACCAAAAGCGTGTTATTAAGTCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACCGTTGATCAGATCAAGAATGCCATCAAGATTAATGATTGGGTCAGCCTTCAAGAGAGCTTTGACAAGATCAACAAACAACTTGAGAAAGTCATGCGTGTTATCGAGTCTCAAAAGCTCCCGAATCTTTATATCAAGGCTCTTGTAATGCTTGAAGATTTCCTTGCTCAGTCTTTGGCCAATAAGGATGCCAAAAAGAAGATGAGTAGCAGCAATGCCAAGGCCTTCAACTCAATGAGACAGAAATTGAAGAAGAACAATAAGCAATATGAGGACTTGATTAACAAATGCAGGGAGAATCCTGAGGAGAGTGAGGGCGAAAAGGATGATGAGGACGACGACGAGGACTCTGAAGAGGATGAGATTATCGAACCTGATCAGCTCAGAAAGCCAGAGCCCATATCAGATTCTGAAACTTCTCAAAATGGTGATGATGGCAAGCCTAATGCTGATGGTGAAGCACCTTGGGATCAAAAACTTAACAAGAGAGATAGGCTTTTGGAGAAACAGTTCATGAAAAACCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGAAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCGCAAAAACTGCAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGTATATGCCAATAAATGTGTGGAAAAAGTGTGTGCAGAACATGCTGGTCATTCTCGATATTCTCGTGCAGCACCCAAACATTAAAGTTGATGATTCAGTGGAGCTAGATGAGAATGAAACTAAGAAAGGGGCTGACTATAACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCCCACACACGTGAATATGTTGAGAGGCTCAGGGATGAGCCCGTGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAACATTGGAGATTTCAAAGCTTCTTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGAGGCAACCAGGAAATTGGCTGAGATGACCGAAGATGGAGATAATGGAGAAGAGGCGAGCGAGGAGTCAAAAGGTTTTGAGGATACAAGAATTCCCGCTCCATTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAGAATAGCAGGACCTTAATGGATGTGTTAGTATCACTAATATACAAATACGGAGACGAGCGCACTAAAGCACGCGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTAGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCACATGGCTGTTTATCTGAACTTTATTCTGGTGGACGGGTGAAAGAATTGCTTGCACAAGGAGTTTCACAGAGTCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCAAAGCGTAAAATCATCAGTAAGAATTTCCGCCGCTTGCTTGAGGTCAGTGAGAAACAAACATTCACCGGTCCTCCTGAAACTGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAAAAGGCCTTTGACATTATTGCATCTCTTGACGTATGGAAATTTGTGAAAAATCGGGATGCCGTGCTAGAAATGCTGAAGGACAAAATTAAGGAGGAGGCACTTAGGACATACCTATTTACCTTCTCTTCATCATACAATTCTCTGAGCGTGGATCAGCTCACAAATTTTTTCGATCTCTCTCTTCCTTGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCATCTGGGTGCATTATATTCAGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTAACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGTGGTGGGTTGGATCTCCCTCCAAGGCGGAGGGATGGGCATGATTATGCTGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCGGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGTGGACGTGCAGGATCTGGTGGAAGGGCATTATCATTCAGTCAAACTGGTGGGAGTGGCGGCTATTCAAGAGGACGGGGAACTGGTGGAGGCGGCTATCAGAATTCAGGGAGGACTCATGGGGGTTCAGCACTGAGGGGACCCCACGGAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA 2808 0.4448 MTSRFFYQGGDHSDSDDEPTDIDDEPSDTEPLQSDPADKSKYYVDGNADDSDDDDNQKRVIKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKLPNLYIKALVMLEDFLAQSLANKDAKKKMSSSNAKAFNSMRQKLKKNNKQYEDLINKCRENPEESEGEKDDEDDDEDSEEDEIIEPDQLRKPEPISDSETSQNGDDGKPNADGEAPWDQKLNKRDRLLEKQFMKNPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGYMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGADYNGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPVFVVLAQNVQEYLENIGDFKASSKVALKRVELIYYKPQEVYEATRKLAEMTEDGDNGEEASEESKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYNSLSVDQLTNFFDLSLPCVHSIVSRMMINEELHASWDQPSGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGHDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRAGSGGRALSFSQTGGSGGYSRGRGTGGGGYQNSGRTHGGSALRGPHGDTSTRMVSLRGVRA* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0025 935 MobiDBLite consensus disorder prediction 137 156 - -
Mal6g0025 935 Pfam PCI domain 665 793 IPR000717 -
Mal6g0025 935 ProSiteProfiles PCI domain profile. 625 797 IPR000717 -
Mal6g0025 935 MobiDBLite consensus disorder prediction 135 156 - -
Mal6g0025 935 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 934 - -
Mal6g0025 935 MobiDBLite consensus disorder prediction 178 196 - -
Mal6g0025 935 MobiDBLite consensus disorder prediction 16 31 - -
Mal6g0025 935 Coils Coil 147 174 - -
Mal6g0025 935 SMART PINT_4 726 814 IPR000717 -
Mal6g0025 935 MobiDBLite consensus disorder prediction 42 58 - -
Mal6g0025 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 934 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal6g0025 935 SUPERFAMILY "Winged helix" DNA-binding domain 721 796 IPR036390 -
Mal6g0025 935 MobiDBLite consensus disorder prediction 824 935 - -
Mal6g0025 935 MobiDBLite consensus disorder prediction 1 58 - -
Mal6g0025 935 MobiDBLite consensus disorder prediction 170 233 - -
Mal6g0025 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 876 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal6g0025 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 726 814 - -
Mal6g0025 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 657 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal6g0025 935 MobiDBLite consensus disorder prediction 854 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0025 Mal-Chr6 363736 371872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0025 1 935 Eukaryotic Initiation Factors Gene Family AT3G56150 65.960 0.0 1146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0025 K03252 - gmx:100781967 1390.56