Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5621 ATGGAACTTTCCAGCAGCCAAGATGGAGAAATCCCAATTCCAATAAACCATAATTATGGTGGTGGTGGTGTTGGTGGTACTAATGGAAATGGTCATCACATGATTCATCATCATGTTCATGAACACCCTCATCCTCCTCCTCCACTACACCACAATCACAACCACAACCACAACCACAGTAATAATATTATATCATCTTCCTCAGGCGGAGCAGTGCCAGTGGCAGTGGCAGTAGTTCCCCAAAACCCTTCAATTAATGGCACCAACACCCCTATGCAAGCAGCAGCTGGTGTGGAATTAGATCATGATATTCAGTCCAACTACAAGAAATTATCATCATCATCATCATCAGTTGTGGTGAGGTACAGAGAATGCCAAAAGAACCATGCAGCATCAATGGGAGGGAATGCCACAGATGGGTGTGGTGAATTCATGCCAAGTGGTGAACAAGGCACCATTGAGGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGGTGAGACTCATGATGAGGATCAGCAGCAGGACAACTACCACCATCATTCAGCCTTCAACTTCAACTTCAACAGGCAGCAGCAGCACCACCACCACCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAAACTCTTGGTCTTGGCTACCACCACCACCATCATGCTACTCCTAATACAGCAACAGGAGGTAACAACAACAACACCAACATTCTTCCTTCTAGAGCTGTACTACCACCTCATGGACATGGACATGGTCACATCATCATGCCATTCAACTACAACATTCCTTCTGAATCTGATGAACAGGAAGAGGCAGCAGCTGGTAGAGTACCTATGCAGCAGCAGCAACAGCAACAGCAGGCAGTGATGAAGAAAAGATTCAGGACAAAATTCACACAGGAGCAGAAAGAGAAAATGCTAAACTTTGCTGAGAAAGTTGGATGGAAATTTCAGAAGCAGGAGGAATCTGTGGTGCAACAGTTCTGCCAAGAAATTGGTATCAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAACTTCAACTTCAACATACTACTGTAACTGCTGCTAATAATCTCCCAACTCCATGA 1143 0.4453 MELSSSQDGEIPIPINHNYGGGGVGGTNGNGHHMIHHHVHEHPHPPPPLHHNHNHNHNHSNNIISSSSGGAVPVAVAVVPQNPSINGTNTPMQAAAGVELDHDIQSNYKKLSSSSSSVVVRYRECQKNHAASMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVEGGETHDEDQQQDNYHHHSAFNFNFNRQQQHHHHHSMRKFMLPLPDQTLGLGYHHHHHATPNTATGGNNNNTNILPSRAVLPPHGHGHGHIIMPFNYNIPSESDEQEEAAAGRVPMQQQQQQQQAVMKKRFRTKFTQEQKEKMLNFAEKVGWKFQKQEESVVQQFCQEIGIKRRVLKVWMHNNKHNLAKKQLQLQHTTVTAANNLPTP* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5621 380 Gene3D - 286 362 - -
Mal5g5621 380 MobiDBLite consensus disorder prediction 1 68 - -
Mal5g5621 380 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 122 171 IPR006456 -
Mal5g5621 380 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 121 172 IPR006456 -
Mal5g5621 380 Pfam ZF-HD protein dimerisation region 120 172 IPR006456 -
Mal5g5621 380 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 362 - -
Mal5g5621 380 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 30 362 - -
Mal5g5621 380 SUPERFAMILY Homeodomain-like 296 361 IPR009057 -
Mal5g5621 380 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 300 356 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5621 Mal-Chr5 130905000 130906142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5621 46 376 ZF-HD Transcription Factor Family AT2G02540 39.181 1.95e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal5g5621 ZF-HD_dimer 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5621 - - mtr:MTR_4g134580 456.062