Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5616 ATGAAGGAAGGAGCAAGTAAAACTAAAAAGAAGATGAATGATCGAAGCAATCTACGGTTGAAGAAGGAACTAACTCAGATTCGCAAAGCTGCTCGTGTCTTGAGGGATCCTGGCACCACTTCTTCCTGGAAATCCACAACCTCCAGATCTACTACTGCATTCAGGAGGAATCCCAATTCTTCACTTCCTCCTTCTTCTGCCAAACACATTCACAACAACAATCTCAAAGACAATACTGTCTTCCTTTGCAACTGGAACAACTACAAAGAAGAAGAAGAAGAAGACAACCACTCTTCCTCCTCCCTTCTTGCAAGTTTAGAGGAAGAGGATGACAGCTTGAGTGATGCTCGCAACTGTGGTGGTGGTTTCGATTCAAAGAGTGACGTTGGGGTTGGGACCCGCTCTTCTTTCTTCAGAAATTCAAATCCCAGAACAACAATCCCTCTTCATCTTAACAAGAACAAAAAAAAGAATAATAACAAAAACCACCACCGCCATTCTTCTTCACTCCCCAGGACGGATGACTCCGGAGACGACGATTATTCTAACTCCATCTCCGGTGCTTCTTCTCTTCTTCCAAAACTCAATTCATCCAAGTTCATCACAAGAACAAGCCTCAGAGATGATTCTTCTTATTCCTATAGTACCCCTGCATTGTCAACCACCTCTTTCAACAGGTATGCTCGCCGCCGTCGCCGTTATCCCAGCACCGTTGGATCCTATGACGGCACAACTACCTCAGTAAATGACGCCGATGATGATGATGATGAGATTGATGACGACCGTTTGGATCTACCTGGTCGTCAAGGATGTGGAATTCCTTGCTACTGGTCAAAGAGGACGACTCCCAAACATAGTGGCAGCTGCTGTTCTCCTTCATTCTCCGATACTTTAAGGAGGAAAGGTAGCAGCATTTTCTGTGGTACTCAATCTATCTATTCAAGACACCACCGCAGATCCTCTTTTTCCGCTTTGCAGCCCAACAAGCGGAGAATGTCTTCAAGGAATGCTCGGGGTGGAGGAGGCGTTGTTCCTCTGCTCAATAGCACTAGCAGTGGTGATGTTAGACAATGTTCATCTTCTATTGGAATTGGTAGGAGTAGGACTGATGATGATGATGATGAACTATCTACTAACTTTGGTGAGCTTGATCTTGAGGGATTGAGCAGACTTGATGGAAGAAGGTGGTCATCCAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTTCCTCTCAATGAGGATGAAGAAGGCTCCTCCGTAAACGGTAGGAGTTTCAGCCACAAGTATAAGCCTTTGTTCTTTGGTGAACTCATTGGACAGAATATTGTCGTTCACTCACTCGTTAATGCCATTTCTAGGGGTCGAATTGCTCCTGTCTATCTTTTTCAGGGTCCACGCGGGACTGGCAAAACATCTGCTGCCAGGATATTCGCCGCAGCCTTGAATTGTGTGGCTTCTGATGAAGGTAGGCCTTGTGGATACTGCAGGGAATGTGCTGATTTCGTTTCTGGCAAGAGCTGTGATCTGGTGGAAGTTGATGGAACTAATAAGAAAGGAATCGATAAAGCTAGATATCTGCTCAAAAGACTGGCCGCCAGGTCTTCTTCGGCCTCCTCCTCGCGATATACGGTTTTTGTTATTGATGAGTGTCACTTGTTAACCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAAGAACCGCCACAGCGAGTTGTGTTCATATTCATAACATCCGATCTTGACAATGTGCCGCGAACAATACAGTCTCGATGCCAGAAGTACCTTTTCAATAAAATTAAAGATGGGGATATTGTGACAAGGTTAAGGAAAATATCTACTCAGGAGAATCTCGACGTTGAAACAGATGCACTGGACCTTATTGCCCTGAATGCAGACGGTTCACTTCGAGATGCAGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTAGAATTAGCAATGTCATCAGACACCGCAGAGACGGTGAAAAGGTCCAGAGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATAGCTGGATCATATGCGGTCGTTGATACCAAACCCGACGGTTCATTCTTTGGTGGTCGGAGTTTGAATGAAGCGGAGTTAGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAAGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTTTACAACTTGGTTCCGTACCTTCTTCAGATGTTACTCAGTCAAGTAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGCTTCAAGAGACATTACTTCTTTCAAGCACAAGTCAGACCTCCAATATATGCCTCAAAAGTCAACACCCCCTGCTTCCCACCAAAAATCAGTAAATGGCAGTTCCAGGCTTCAACTTGATGGTTTCAGCTTGAACTCAAAGCCGTCAAATAGCCCAGTTATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCTTATTGCTGGGAATACACTGTTTAGATGCTTAGACTCAGGGAAATTATGTGACATATGGGCATGTTGTATTGAGAGGTGTCACTCTAAGACATTAAAACAGCTGCTACACGATCACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGAGATGGAGATATTAAACTCAGGGTTGAAAGGTTTTTAAGTAGCATTACAAACTCCTTGGAAATTGTTCTCAGACGAATTGTGGAGGTCAGAATTATCCTCTTGCCAGATGGTAAAGGTGAAAATCAGGTTAATCTGTCGGGTCTAAAGCAAGCCGCGTCAGAAATGGCAAGCGAGGACGAACAAAGGCGAGGTCATATGAATGGAACTATGTCATATTCAACTTTGCCTCAATCAGATATTCCGACCGAAGGAAATGGCGTGAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATAATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAAGCTGTAGAAAAAGGTTCCCCTGGATCGTTGAGTCGTTTGAGACCCGAGAAGAATCAAGTCCTGCCTCAGGATGGTGTCTATGGTATAAACCCAATGGAGTCCATGGATTCAGCAAAGTTTTCCTCTCATCAGAATAGGGAAGATGACACAAATAGTGATCTTAAAATTTTGAGCCTTAAAAATGGAAGGGTCCTGCCGAAGGATCAAATTGGTAAAAGAGCCGAGGGTTATCCCATGTCCCCAAGTATATTGCATGACAACAGTTTAACAATAATTACTGGAAAAGATAACCTGGATTGTGAATCTGGTTCAGGAGCTGGAGGTTGCGGGTTTTTATGTTGGAATAATAAGTCCAAAACTAGAAGGGCAGTGAAGGTAAAAGGCACCCCAGTTGGAGGAGGGCGTAAAGTTGGGCGTTTTTCATTGTTTGGTGAGTGTGGTAAGCCAAAGAAAAAGGAGGGTAAAAGATAA 3591 0.44 MKEGASKTKKKMNDRSNLRLKKELTQIRKAARVLRDPGTTSSWKSTTSRSTTAFRRNPNSSLPPSSAKHIHNNNLKDNTVFLCNWNNYKEEEEEDNHSSSSLLASLEEEDDSLSDARNCGGGFDSKSDVGVGTRSSFFRNSNPRTTIPLHLNKNKKKNNNKNHHRHSSSLPRTDDSGDDDYSNSISGASSLLPKLNSSKFITRTSLRDDSSYSYSTPALSTTSFNRYARRRRRYPSTVGSYDGTTTSVNDADDDDDEIDDDRLDLPGRQGCGIPCYWSKRTTPKHSGSCCSPSFSDTLRRKGSSIFCGTQSIYSRHHRRSSFSALQPNKRRMSSRNARGGGGVVPLLNSTSSGDVRQCSSSIGIGRSRTDDDDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNEDEEGSSVNGRSFSHKYKPLFFGELIGQNIVVHSLVNAISRGRIAPVYLFQGPRGTGKTSAARIFAAALNCVASDEGRPCGYCRECADFVSGKSCDLVEVDGTNKKGIDKARYLLKRLAARSSSASSSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVETDALDLIALNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNEAELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDVTQSSSSRRQSCKTTEDDPSSASRDITSFKHKSDLQYMPQKSTPPASHQKSVNGSSRLQLDGFSLNSKPSNSPVIDDGSTVVSSDDLIAGNTLFRCLDSGKLCDIWACCIERCHSKTLKQLLHDHGKLVSISEVQGVLVAYVAFGDGDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGKGENQVNLSGLKQAASEMASEDEQRRGHMNGTMSYSTLPQSDIPTEGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYGINPMESMDSAKFSSHQNREDDTNSDLKILSLKNGRVLPKDQIGKRAEGYPMSPSILHDNSLTIITGKDNLDCESGSGAGGCGFLCWNNKSKTRRAVKVKGTPVGGGRKVGRFSLFGECGKPKKKEGKR* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5616 1196 MobiDBLite consensus disorder prediction 92 182 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 345 365 - -
Mal5g5616 1196 Gene3D - 416 598 IPR027417 -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 992 1007 - -
Mal5g5616 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 647 IPR027417 -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 778 835 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 318 375 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 129 149 - -
Mal5g5616 1196 Gene3D - 602 663 - -
Mal5g5616 1196 PANTHER PROTEIN STICHEL-LIKE 1 159 1133 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 150 166 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 792 812 - -
Mal5g5616 1196 Coils Coil 89 109 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 1 30 - -
Mal5g5616 1196 Pfam DNA polymerase III, delta subunit 439 600 - -
Mal5g5616 1196 Coils Coil 733 763 - -
Mal5g5616 1196 SMART AAA_5 456 607 IPR003593 -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 38 73 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 235 256 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 978 1018 - -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 814 835 - -
Mal5g5616 1196 CDD HLD_clamp_pol_III_gamma_tau 600 663 IPR045085 -
Mal5g5616 1196 MobiDBLite consensus disorder prediction 1 73 - -
Mal5g5616 1196 CDD AAA 438 597 - -
Mal5g5616 1196 Pfam DNA polymerase III subunits gamma and tau domain III 654 720 IPR022754 GO:0003887
Mal5g5616 1196 MobiDBLite consensus disorder prediction 318 333 - -
Mal5g5616 1196 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 424 774 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mal5g5616 1196 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 159 1133 - -
Mal5g5616 1196 SUPERFAMILY post-AAA+ oligomerization domain-like 671 772 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5616 Mal-Chr5 130858434 130863978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5616 427 715 Core DNA Replication Machinery Family AT1G21690 24.579 4.86e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5616 - - gmx:100814391 1485.32