Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5615 ATGGATGGAATATCATCATCACAACAACAGCAACAGCAACAACAACAACAACAACACCCAGTACCTCGAACAGTTGAGGAAGTTTTCAGCGACTACAAAGGCAGACGCGCTGGTTTGATCAAAGCACTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGTGATCCCGACAAGGAGAATTTATGCCTCTATGGATATCCAAATGAAACATGGGAAGTCAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATTAACTTTGCCAGGGATGGAATGCAGGAGAAGGACTGGTTATCACTCGTTGCAGTTCACAGCGACTCCTGGCTGCTTGCTGTTGCTTTCTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTCTTTCAGATGATAAATGATCTGCCAACTATCTTTGAGCTTGCGACAGGAGCTGCTAAGCAATCAAAGGACCAACTAACTGCTCCCAACAATGGCAGCAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCCGAGTCTCAGGTGAAAGGTGTGAAGATGTCTGCACCACCCAAAGAAGAGGTTGACAGTGGTGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGACGAATTCTGGATTTGTTGTGATATTTGCGAGAAGTGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCTGAACACATCAAGCAATACAAGTGCCCCGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG 810 0.4519 MDGISSSQQQQQQQQQQQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPDKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTIFELATGAAKQSKDQLTAPNNGSNSKYKSSGKSRQSESQVKGVKMSAPPKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5615 269 CDD PHD_AL_plant 215 264 IPR044104 -
Mal5g5615 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 262 IPR013083 -
Mal5g5615 269 SMART PHD_3 214 262 IPR001965 -
Mal5g5615 269 MobiDBLite consensus disorder prediction 198 212 - -
Mal5g5615 269 PANTHER CPG BINDING PROTEIN 18 265 IPR045104 GO:0006355|GO:0042393
Mal5g5615 269 SUPERFAMILY FYVE/PHD zinc finger 203 266 IPR011011 -
Mal5g5615 269 Pfam PHD-finger 215 262 IPR019787 -
Mal5g5615 269 MobiDBLite consensus disorder prediction 1 23 - -
Mal5g5615 269 MobiDBLite consensus disorder prediction 1 24 - -
Mal5g5615 269 ProSitePatterns Zinc finger PHD-type signature. 215 261 IPR019786 -
Mal5g5615 269 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 18 265 - -
Mal5g5615 269 MobiDBLite consensus disorder prediction 157 187 - -
Mal5g5615 269 ProSiteProfiles Zinc finger PHD-type profile. 212 264 IPR019787 -
Mal5g5615 269 MobiDBLite consensus disorder prediction 157 212 - -
Mal5g5615 269 Pfam Alfin 24 150 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5615 Mal-Chr5 130850156 130853361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5615 18 265 Alfin-like Transcription Factor Family AT1G14510 78.629 1.27e-127 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mal5g5615 Alfin 2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5615 - - gmx:100807826 431.024