Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5612 ATGGCAATAGCATCATCTACCATGAGCAGCATGAGCTTGAGTCACGAAGATGGAACTACTACTACTACCACTTCAAACGAGAACAAAGAAACTACAACAGTAGTAGTAGATGATGATGATGATGATGATCACGAGCATGACGTGGTTATGCCAGGTTTTCGTTTCCATCCAACAGAAGAAGAGCTTGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAACGTTTCAACGTTGAGCTTATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGGTTTGGCAGCAATAGGAGAGAAGGAGTGGTACTTTTATGTGCCTCGAGATAGAAAGTATAGAAACGGTGATCGTCCTAATCGTGTAACAACTTCTGGTTATTGGAAGGCAACAGGAGCTGATAGGATGATTCGAACTGAAAACTTGCGTTCAATTGGACTCAAGAAAACCCTAGTTTTCTATTCTGGGAAGGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAACGAGTATCGCTTACCCCAACATGAAACCGAACGATATCAAAAGGGTGAGATATCACTATGCCGGGTATACAAGAGAGCTGGAGTAGAAGATCATCCCTCCCTACCTCGTTGTCTCCCAATTACAAGACCATCATCATCATCAAGAGGAATTACTTCACATAATTCAGAAAAGAACAAGCAGAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCAAAGACAGCTGCAGCAATTGATGATCAAATAGTTAACAAAATGGAGGGAGGAAGCAGTAGCAGTGGCGGTGGTAATTCATCAGATCATCATGTGACAACAACTCTTGGGCTTTCCAAGTACAGCAGCAATAATCCTACTCCTAATTACCGTGCAGAAGAGGAAGAAGGATTGATGATGATGCAGCATCAGCATCAGCATCAACCTAGGCAATTAGTACAGTATGCATCATCAGCAGGAAACTCTGTGTTAGTCTCAGCTTGTGGTGGTGGCGCCGCCATTTTCCCTGCTACTAGTGCTGCAATGATGATGGATGATCTTAATAGGCTTATAAGTTATCAACAACAACAACAGCAGCAGCAATATTGTTACAATAATGTTCAAAACCAGCAGCAGCAGCATCTCAATCCAAATCCAAATCATTTCTCTACTTTGCTGATGCAACCAATTATGTCTCTACCAAATCAACTTCCAACAAACTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGATCATAATAATCACCCCAACAGCAGTAACAACACCTCCTTCAAGTAA 1296 0.4244 MAIASSTMSSMSLSHEDGTTTTTTSNENKETTTVVVDDDDDDDHEHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENLRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSSSRGITSHNSEKNKQNEILGMGFVVGQSKTAAAIDDQIVNKMEGGSSSSGGGNSSDHHVTTTLGLSKYSSNNPTPNYRAEEEEGLMMMQHQHQHQPRQLVQYASSAGNSVLVSACGGGAAIFPATSAAMMMDDLNRLISYQQQQQQQQYCYNNVQNQQQQHLNPNPNHFSTLLMQPIMSLPNQLPTNFSDRLWDWNPIPEDHNNHPNSSNNTSFK* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5612 431 MobiDBLite consensus disorder prediction 210 228 - -
Mal5g5612 431 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 420 - -
Mal5g5612 431 SUPERFAMILY NAC domain 49 195 IPR036093 GO:0003677|GO:0006355
Mal5g5612 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 29 420 - -
Mal5g5612 431 MobiDBLite consensus disorder prediction 1 31 - -
Mal5g5612 431 MobiDBLite consensus disorder prediction 1 42 - -
Mal5g5612 431 MobiDBLite consensus disorder prediction 258 290 - -
Mal5g5612 431 MobiDBLite consensus disorder prediction 205 228 - -
Mal5g5612 431 ProSiteProfiles NAC domain profile. 49 196 IPR003441 GO:0003677|GO:0006355
Mal5g5612 431 Pfam No apical meristem (NAM) protein 51 175 IPR003441 GO:0003677|GO:0006355
Mal5g5612 431 Gene3D NAC domain 58 199 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5612 Mal-Chr5 130832565 130834970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5612 33 207 NAC Transcription Factor Family AT5G39820 49.505 2.42e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g5612 NAM 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5612 - - mtr:MTR_4g134460 585.874