Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5586 ATGGAAACTGGAGGAGGTTTTCATGGCTACCGCAAACTCCCCAACAACACTACCTCTGCAGCTGCTGGGACGTTGAAGCTATCAGTTTCTGAGATGAACACTAGGCAGCAAGTAGGAGATCAGCAGAACAACAACCACTCAACAACAACAGGAACAGAACAAGACAATGAATGCATTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGTAAGATTCTACCTCCACATGCAAAAATCTCTGATGATGCAAAAGAAACAATCCAAGAGTGTGTGTCTGAGTACATCAGCTTCATAACTGGTGAAGCCAATGAACGTTGTCAGAGAGAGCAAAGGAAGACAATAACTGCAGAAGATGTGCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTTACAATGTACCTTCATCGTTACCGTGAGCTTGAGGGTGATCGTACTTCAATGAGAGTTGAACCTATGGGAAAAAGGGGTATGGAATATGGAAATTTAGGAGGTTTTGTCCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATGCACCAGCTTATATGATGAGGGATGGTAATAATAATAATGCATCAAATGCTGCTGCTGGAGGCTCATCTCATTCTCAGGCACTTGCAAATGCTGAAGCCAATGGTCATCATCACCATCAATATAAATGA 708 0.4223 METGGGFHGYRKLPNNTTSAAAGTLKLSVSEMNTRQQVGDQQNNNHSTTTGTEQDNECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPMGKRGMEYGNLGGFVPQFHIGHPNGGYYGNAPAYMMRDGNNNNASNAAAGGSSHSQALANAEANGHHHHQYK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5586 235 MobiDBLite consensus disorder prediction 34 56 - -
Mal5g5586 235 ProSitePatterns NF-YB/HAP3 subunit signature. 97 113 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal5g5586 235 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 168 - -
Mal5g5586 235 SUPERFAMILY Histone-fold 63 160 IPR009072 GO:0046982
Mal5g5586 235 Gene3D Histone, subunit A 53 173 IPR009072 GO:0046982
Mal5g5586 235 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 66 130 IPR003958 -
Mal5g5586 235 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Mal5g5586 235 PRINTS CCAAT-binding transcription factor subunit A signature 132 150 - -
Mal5g5586 235 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Mal5g5586 235 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5586 Mal-Chr5 130527117 130529402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5586 5 195 CCAAT-HAP3 Transcription Factor Family AT5G47670 63.033 7.77e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal5g5586 CBFD_NFYB_HMF 7.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5586 K08065 - gmx:100800011 288.885