Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5582 ATGGCTGAATCAGATGATGAGTCAGGTGGTCAAGGTTCTGGGAGCAGAGAATTACTGCAAGAAAGGCTCCTTCCCATAGCAAACGTGGGTAGGATCATGAAGAAAGCGTTACCGATGAGAGCGAAGATATCGAAAGAAGCTAAAGAAACGATGCAAGAGTGTGTATCAGAGTTCATAAGCTTCATAACAGGGGAAGCATCTGAAAAGTGTCAGAAAGAGAAGAGGAAGACAATAAACGGTGATGATCTTGTTTGGGCCATGACTACACTTGGCTTTGAAGAGTATGCAGAGCCTCTTAAGGGTTACCTTCACAAGTATAGAGAGATTGAAGGAGACAAGAATTTTTCTATGAATATGATGGGTACTAGTAAGGAGCAGCAGGGTAGTATTGATCGATTCTTCCAAGGGTGA 411 0.4282 MAESDDESGGQGSGSRELLQERLLPIANVGRIMKKALPMRAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKGYLHKYREIEGDKNFSMNMMGTSKEQQGSIDRFFQG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5582 136 Gene3D Histone, subunit A 14 132 IPR009072 GO:0046982
Mal5g5582 136 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal5g5582 136 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Mal5g5582 136 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Mal5g5582 136 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Mal5g5582 136 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal5g5582 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Mal5g5582 136 SUPERFAMILY Histone-fold 20 115 IPR009072 GO:0046982
Mal5g5582 136 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5582 Mal-Chr5 130491464 130491874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5582 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.200 3.59e-60 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal5g5582 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5582 K08065 - gmx:100778034 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5582 5 130491464 130491874 Mal4g3091 4 91959371 91959841 PCT