Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5561 ATGCAAATGTCTCAGCAAAGGCCAAATTCAGCTGGTCTCCATTTCTATCAACAATCTTCGCAGGGCATTTACCTACAAAGCAATCTATGTGGTGATAGACATGGTAGCAGCAGTCAGGGAACTGATTTGTCTTTCGAAACCTACAAGGAGCAATGCTTCACCCTAGAGTCCTACCCAGAAATCACTGGTTTCATAGATTGTGATTCCCCCCCTTCCTATGCCAGTGTATCATCTAACAAGAGTCCATTTTCTCCACAAGATTCTCAATCATGCCATTCAGATCCTCACCAGTCATCTGACAACACCTATGGATCACCGATAAGCGGGATGTCCAGTGTTGACGATGGCCATGATTTGAAGCACAAACTTAGAGAACTGGCGAATTCATTGTTGGGGCCTGATGATTTTGATATTGTTGACAGTTACAGCAGCTGCATGGAGACTAGCCTCCAAGGAGAATCTTCATCAGCTAAATATAATTGGGATCTGATTTCAGAGAGCATTCCAAAGCTTGACATGAAAGAAGTCCTCGTGTTATGTGCACAAGCTGTATCTGATGGTGATATTCCAACAGCAAGAGGCTGGATGGATAATGTGTTGGTGAAGATGGTATCGGTTGCTGGAGATCCAATCCAGAGGTTAAGTGCTTACTTGTTGGAAGGGCTTAGAGCAAGATTAGAATCATCCGGAAGCTTGATCTACAAGTCGTTGAAATGTGAACAACCAACGAGCAAAGAGCTGATGAGTTACATGCACATGCTGTATCAGATTTGTCCATATTTTAAGTTTGCATACATATCTGCAAATGCTGTTATTTCTGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAAATCGCACAGGGAACACAGTGGCATCTGCTTATTGAAGCGCTTGCACGCAGGCCCGGCGGACCACCTTTTATCCGAATAACAGGTGTTGATGATTCACAATCATTTCACGCACGTGGTGGAGGACTTCAGATTGTAGGAGAACGACTTTCAGACTTTGCCAGGTCTCGTGGAGTTCCGTTTGAGTTCCATAGCGCTGCAATGTCTGGTTGCGAAGTTCAACGAGAAAATCTTAGAGTTAGACCTGGAGAAGCCCTTGCCGTGAATTTTCCCTTTAGTTTGCACCATATGCCAGATGAGAGTGTGAGCATAGAGAATCATAGAGACAGATTGTTGAGGTTGGTTAAGAGTTTGTGTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCTTTCTTTAATAGATTTGTGGAGACAATGGATTTTTACACAGCTATGTTTGAATCAATAGATGTTGCTTGCGCCAAAGACGATAAGAAGCGGATTAGTGTGGAACAGAACTGTGTAGCGCGGGACATTGTCAACATGATAGCCTGTGAGGGGGTGGAGAGGGTGGAGAGGCATGAAGTTTTTGGAAAGTGGAGAATGAGATTTTCCATGGCTGGATTTAGACAATGCCAATTGAGTTCTTCAGTGATGCATTCTGTCCAAAATATGTTGAAGGAATTCAATCAAAATTATAGGCTTGAACATAGAGATGGTGCTCTCTATCTTGGTTGGATGAAGAGAGCTATGGTCACCTCTTCTGCTTGGAGGTGTAACTGA 1641 0.4321 MQMSQQRPNSAGLHFYQQSSQGIYLQSNLCGDRHGSSSQGTDLSFETYKEQCFTLESYPEITGFIDCDSPPSYASVSSNKSPFSPQDSQSCHSDPHQSSDNTYGSPISGMSSVDDGHDLKHKLRELANSLLGPDDFDIVDSYSSCMETSLQGESSSAKYNWDLISESIPKLDMKEVLVLCAQAVSDGDIPTARGWMDNVLVKMVSVAGDPIQRLSAYLLEGLRARLESSGSLIYKSLKCEQPTSKELMSYMHMLYQICPYFKFAYISANAVISEAMANESRIHIIDFQIAQGTQWHLLIEALARRPGGPPFIRITGVDDSQSFHARGGGLQIVGERLSDFARSRGVPFEFHSAAMSGCEVQRENLRVRPGEALAVNFPFSLHHMPDESVSIENHRDRLLRLVKSLCPKVVTLVEQESNTNTSPFFNRFVETMDFYTAMFESIDVACAKDDKKRISVEQNCVARDIVNMIACEGVERVERHEVFGKWRMRFSMAGFRQCQLSSSVMHSVQNMLKEFNQNYRLEHRDGALYLGWMKRAMVTSSAWRCN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5561 546 Pfam GRAS domain family 174 544 IPR005202 -
Mal5g5561 546 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 19 543 - -
Mal5g5561 546 MobiDBLite consensus disorder prediction 75 109 - -
Mal5g5561 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 543 IPR005202 -
Mal5g5561 546 ProSiteProfiles GRAS family profile. 164 544 IPR005202 -
Mal5g5561 546 MobiDBLite consensus disorder prediction 75 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5561 Mal-Chr5 130254156 130255796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5561 1 546 GRAS Transcription Factor Family AT4G17230 57.952 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mal5g5561 GRAS 1.5e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5561 - - gmx:100776109 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5561 5 130254156 130255796 Mal4g3118 4 92439035 92440651 PCT