Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5557 ATGGCTAGTGGAAAAGAACAACCAATTTGTACTCATATGGTTGATATACAAGAGTTGAGAGTCACAAATTTGGTTGATTTGAACAATCTTCCAAATGGTGAACCATGTGGTAATTCAGAATATGAAGTGGTTGAGTTGAGTAACCATGACCACGAAGCAGATGTTATTGAAAACTATTTTGAACCTTTTATAGGGCAATGTTTTCTAAGTGAGGAAGAAGCTTTCAGATTTTATGAAAATTATGCCAAAAGGAGTGGATTCTCAATTAGAAAAGGTAGATTTGTTAATAAAAATGGGATAATACATAGAAGAGATTACTTTTGTCACCGTGGAGGATTTCCGGATAAAAAATTTCATGATCCATCTAAAGAACAACGAAATAGACAATCTTCAAGATGTGGATGCAAGGCGGGCATGACAATCAAATTGAAGAAATCAGCTGAAATTTTTCCAGAAGAGTGGCAGGTAATTGAATTTATATCCAACCACAATCATGATTTACTACCTCCAGATCAAGTGCGCTTCCTTGCATCTTACCGCAACATTTCTAAGGAAGATGAGAAGCAGATTTTGCTATTAAAAGAAGCTGATCTTTCCGTCAAGCAAATAATGCGTGTTATGGAGCTTGAGAAAAATGTAAAGCATGGAGATCTTCCATTTCTTCGGAAAGATATTCATAATTTCTTTAATAAGATTCACCAAGATAACATGAATGGTGATGCTAATGATCTCTTACAATTTTGTAAGTTTGCCAAGGATGAAAACCCTTGCTTCCAATTTGCCTTTACTGTTGATAAAGAAAAAAGACTTGAGAATATATTTTGGTCTCTACCTCGTTGCTTTGAATTGTATCAGGAGTATGGAGATGCTGTTGCATTTGATACTACTTACAAGGTGAATGCTTATAATATGCCTTTTGGCATTTTTGTTGGAGTCGACAATCACGGCAGGACAATATTGTTTGGTTGTGCGCTCATTCGGAATGAAACAGTGTCTACATTTCAATGGTTAATGAAAACTTTTGTTACTCTCATGAAGAAGCCTCCAAAGACAATCATTACTGATCAAGATCCATGGATGACTCAAGCTATTTCTTTTGAGATGCCATCCACAAAACATGCTTTTTGTATATGGCACATTACTGCTAAATTCAGTGGTTGGTTTACTTCAATTCTTCGAAAACAATATTTATCATGGTGCGCTGATTTTTATAAGCTTTACAAGCTTGACAATATTGATGATTTTGAAAAAGAATGGATAATAATTGTTTCCAAGTACAATCTAGAAGCAAATAAGCACATAAAAGGCCTGTATGAAGTTAAGCAGTATTGGGTTCCGGCTTATCTTCGTGGACATTTCTTTGGGGGTATGACAACAACTGGAAGATCAGAGAGTATAAATGGGTTTCTGAAACGCTTTACTTCATCTCGTTCATGTTTAACTCAACTTTTCAAACAAGTTGATCTTGCCATTGAGGACATTGGGCAACAACAATTACATCATACCATGTTGGATACATATAGGGGATCTTCACTTCGATCTTTATCCCCTTTAGAGGAGCAAGTTTACAATATTTTCACAAAATTTGCGTTCAAGAAGTTTCAGGAGGAATTTGAGAGGGCAACTCAATACAAGATCTGTGAAGAAAATCATATAGAATATACTGTTAAATATTACAAGGAGCAACATTCACAAAAGCATAAAGTATTCTGGGATGGTGATGTGGTTGGTTGTAGTTGTAAGCATTTTGAGTTTTGGGGTATTCTTTGTCGTCATGTATTGACAATATTCCTTCATAAAGATTGCTTTCAGATTCCAATAAGGTACTTGCCGTTACGTTGGTGTCGTAATGAATTTCAAAGACCGGCTGGAGTAAATATGATGCTTAGTGAAGGAAGAGCTATTGATAATGTGGAGAATGCAGTAGATTTCATTAAAAATCCCCCAAGATCAATGACAAAAGGTCGTCCCAAAACAAAACGAGCAAAAGGTGGAGTGGAATTGTCAAGGAAAGCAAGATCTTGTACTTTTTGCAATAGAAGTGGCCACAATGTTACAACTTGTCCTGACAAAGAAAGTGATGTTCAACGGACAATCACCAAAAAAAGGAAGAATAAAGATCAAGCACAACCAAATTTGAATCCTGTTTTTTATCTAAAGTCTTCTTAG 2169 0.3559 MASGKEQPICTHMVDIQELRVTNLVDLNNLPNGEPCGNSEYEVVELSNHDHEADVIENYFEPFIGQCFLSEEEAFRFYENYAKRSGFSIRKGRFVNKNGIIHRRDYFCHRGGFPDKKFHDPSKEQRNRQSSRCGCKAGMTIKLKKSAEIFPEEWQVIEFISNHNHDLLPPDQVRFLASYRNISKEDEKQILLLKEADLSVKQIMRVMELEKNVKHGDLPFLRKDIHNFFNKIHQDNMNGDANDLLQFCKFAKDENPCFQFAFTVDKEKRLENIFWSLPRCFELYQEYGDAVAFDTTYKVNAYNMPFGIFVGVDNHGRTILFGCALIRNETVSTFQWLMKTFVTLMKKPPKTIITDQDPWMTQAISFEMPSTKHAFCIWHITAKFSGWFTSILRKQYLSWCADFYKLYKLDNIDDFEKEWIIIVSKYNLEANKHIKGLYEVKQYWVPAYLRGHFFGGMTTTGRSESINGFLKRFTSSRSCLTQLFKQVDLAIEDIGQQQLHHTMLDTYRGSSLRSLSPLEEQVYNIFTKFAFKKFQEEFERATQYKICEENHIEYTVKYYKEQHSQKHKVFWDGDVVGCSCKHFEFWGILCRHVLTIFLHKDCFQIPIRYLPLRWCRNEFQRPAGVNMMLSEGRAIDNVENAVDFIKNPPRSMTKGRPKTKRAKGGVELSRKARSCTFCNRSGHNVTTCPDKESDVQRTITKKRKNKDQAQPNLNPVFYLKSS* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5557 722 ProSiteProfiles Zinc finger SWIM-type profile. 554 601 IPR007527 GO:0008270
Mal5g5557 722 Pfam FAR1 DNA-binding domain 76 169 IPR004330 -
Mal5g5557 722 Pfam SWIM zinc finger 577 600 IPR007527 GO:0008270
Mal5g5557 722 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 617 IPR031052 GO:0006355
Mal5g5557 722 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 62 617 - -
Mal5g5557 722 SMART 26again6 576 603 IPR006564 GO:0008270
Mal5g5557 722 Pfam MULE transposase domain 291 382 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5557 Mal-Chr5 130222642 130225602 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal5g5557 FAR1 3.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5557 - - gsj:114409893 805.438