Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5551 ATGACTCCGATCGAAAGCCCTAACCTTCAACAACAACAACAAAATCGTTCATCTTCGAAACGAAAATTAGACGAAGACGACGAAAACAACGCGTTAGACGATGACTTAGTCTATGTAAGAATGAGAAAAGACGAAACGACAAAAACAGCCGTTCATTCTTCATGGAGCGGTGGTGGTGTTGGCGGCGATGGTGGTAGTTTCTCTAAGAAAAAATCACCAATTCATTTTTTCATTCGAATGATGTCAAAAGGCTATAACGTTGTTATACACGCTTATCCAGAAGACACAGTGAAATCAATTCACAAACGCATAGAAGAAATGAAAGGAATTCCTCTCTTTGAACAGAGGTTGATTTTCAATGGTAAACAGCTTCAGTGGGAACAAACACTCGCACAGTGTGGAATTCAAAACGATGCGAATCTTCATCTTGTTGGTCGAATGCGTAGCACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTTCTATTGTTTATGATCTTTGTCATGGTGTTAATGTTCCCGAGCCTGTTAAATCTGTTAAGAGTCTTCTCACTACTTATATTAATTTGGCTTTGACACCTAAACCCAAACTTGATGCTGAATCTGCCACTAGTTATTTTCAGATTTTCATGAATTCTTCGGCTATTTCGGTTCTTGTTACGCTGTATGTTTCGCCTTATCCGGGTAATAAGCTGTGTTCTGATTCTTGTATTAGGCATTTTTTGAGTGGTTGTAGGACTACATTGTCCAAGACGTTTCATACTCAGGCTGCGCGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGTAGAGTTGGGACTCATGATCCTTTGTATCTTTTTTGTCGTAGTAGTTTGGGGGCTTTTTTGGAAGCTGCTGAAATTTCACTTGCGGCGTCTGAGGATGAGAATTACAAAGGGTTGGTGTTGGTTCAGGATTTGTTTCCGTTTGTTCGCGAACTTGCTGATACTTTGTTGAGGAATTTGGATTTGAGCATGGAATCCCCTTCCCTTGCTTGTCCTTTGTTGAACAATGTTGAGGATTTTCAAGCCTTTTTAGTACCTGTGAGGACTGGAATCGAGCAGCAGCAGGCTCTCCGTGGTTCTGCTGCTTACCAGCAGCAGCACGACAAGAACAAGAACGGATTGGTCGCTGAAGAGATTGAATACCTTCGTCTGTTGTACAATCAGTTGTTGTCCAAAATTGATACGTGCCTTCAAAAAATGGAGAAAAGATTCAATGACAAGGAAATGGTGTTTGAGGAAAATTATTTTTATCCTGCGTGCTCTCTCTATCTTTCACTTTTGAAGGAGTTGCATAAGATTTCTAAGCTTTATGATGGTGCTAGTGCTACAGAAGAGCTCCGTCGTGTTTTGATGCGTCGGAAGAGTGTGATGTGTCTGATAATCGTTAAATATGCAAAGAGGGCCGACGAGCATCAGTGGATTCTTGACTACAAGAATGTCACCAATTTCGAGGCTAGGAGGCATTTGGCCATGATGATATTCCCGGAGGTGAAAGAAGACTATGAGGAGTTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTTGAATACATTGCACGGGCTGATCCCGAATCACTGCGTGCTGGACTGTTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCCGGTGTGTTGAGGGAGTGGTTCCTTTTGGTTTGTCAAGCACTTTTCAATCAGGAACATGCTCTTTTTGTTGCCTGCCCAAAAGATCGAACAAGATTTCTCCCCAATTCTGCTTCCAAGGTACAACATAATCTGCATCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTAGGTATTGTTTTTGATCGCGTGTTTTTCATGCAATTGGCTGGAAAGCCTATTACTTTAGAAGACATAAGGGATGCAGATCCTGACCTATATAGAAGCTGCAAGCAAATATTGGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACGTTTATTAGTGAAGTGGAGGAATTAGGACAGAGGAAAGCGGTCGAGCTCTGTCCTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAACATCCATAGATGAGCAGGTGTCACACTTTGCCAAAGGTTTTGCTGATATTCTTTCAAGTTCAAAGCTCCAGCAGTTCTTCTTTCGAAGTTTAGAGCCTGAAGATCTTGATTGGATGCTGCGTGGGAGTGAAGATGCCATTTCCGTCGAAGATTGGAAAGCACACACCGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGGTAGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTCTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTTCGTGGTTTGGGTTCCCGTCTCCACATTTACAAGTCCCATGAATCTGGCGATCGTCTTCCTTCATCTCATACATGCTTTTACCGGCTGTGTTTCCCAGCTTATTCATCCATGCCTGTCATGCAAGCTCGTCTTAAAGTCATTACTCAAGAACATATTGGCTCTAGTTTTGGTACTTGGTGA 2634 0.4157 MTPIESPNLQQQQQNRSSSKRKLDEDDENNALDDDLVYVRMRKDETTKTAVHSSWSGGGVGGDGGSFSKKKSPIHFFIRMMSKGYNVVIHAYPEDTVKSIHKRIEEMKGIPLFEQRLIFNGKQLQWEQTLAQCGIQNDANLHLVGRMRSTEHPQAWQVVNDMVSIVYDLCHGVNVPEPVKSVKSLLTTYINLALTPKPKLDAESATSYFQIFMNSSAISVLVTLYVSPYPGNKLCSDSCIRHFLSGCRTTLSKTFHTQAARVALEFCKLLSRVGTHDPLYLFCRSSLGAFLEAAEISLAASEDENYKGLVLVQDLFPFVRELADTLLRNLDLSMESPSLACPLLNNVEDFQAFLVPVRTGIEQQQALRGSAAYQQQHDKNKNGLVAEEIEYLRLLYNQLLSKIDTCLQKMEKRFNDKEMVFEENYFYPACSLYLSLLKELHKISKLYDGASATEELRRVLMRRKSVMCLIIVKYAKRADEHQWILDYKNVTNFEARRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRAGLFMEFKNEEATGPGVLREWFLLVCQALFNQEHALFVACPKDRTRFLPNSASKVQHNLHLEYFSFCGRVIALALMHKVQVGIVFDRVFFMQLAGKPITLEDIRDADPDLYRSCKQILDMDSDFIDSDALGLTFISEVEELGQRKAVELCPGGKNIVVNSKNRVKYVDLLIKDRFVTSIDEQVSHFAKGFADILSSSKLQQFFFRSLEPEDLDWMLRGSEDAISVEDWKAHTEYNGYKETDIQISWFWEVVGRMTAEEKKVLLFFWTSVKYLPVEGFRGLGSRLHIYKSHESGDRLPSSHTCFYRLCFPAYSSMPVMQARLKVITQEHIGSSFGTW* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5551 877 Coils Coil 9 29 - -
Mal5g5551 877 MobiDBLite consensus disorder prediction 1 30 - -
Mal5g5551 877 SUPERFAMILY Hect, E3 ligase catalytic domain 511 863 IPR035983 GO:0004842
Mal5g5551 877 CDD HECTc 515 875 IPR000569 GO:0004842
Mal5g5551 877 SUPERFAMILY Ubiquitin-like 75 162 IPR029071 -
Mal5g5551 877 SMART hect_3 534 875 IPR000569 GO:0004842
Mal5g5551 877 Gene3D Hect, E3 ligase catalytic domain 637 719 - -
Mal5g5551 877 Pfam Ubiquitin family 77 148 IPR000626 GO:0005515
Mal5g5551 877 SMART ubq_7 74 146 IPR000626 GO:0005515
Mal5g5551 877 PRINTS Ubiquitin signature 127 148 IPR019956 -
Mal5g5551 877 PRINTS Ubiquitin signature 106 126 IPR019956 -
Mal5g5551 877 PRINTS Ubiquitin signature 85 105 IPR019956 -
Mal5g5551 877 Pfam HECT-domain (ubiquitin-transferase) 565 869 IPR000569 GO:0004842
Mal5g5551 877 ProSiteProfiles HECT domain profile. 536 877 IPR000569 GO:0004842
Mal5g5551 877 Gene3D Hect, E3 ligase catalytic domains 516 744 - -
Mal5g5551 877 MobiDBLite consensus disorder prediction 1 17 - -
Mal5g5551 877 Gene3D - 67 162 - -
Mal5g5551 877 Gene3D Hect, E3 ligase catalytic domain 760 876 - -
Mal5g5551 877 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 68 875 - -
Mal5g5551 877 ProSiteProfiles Ubiquitin domain profile. 74 150 IPR000626 GO:0005515
Mal5g5551 877 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 68 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5551 Mal-Chr5 130106903 130113131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5551 74 148 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.333 8.34e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5551 - - gmx:100789233 1209.9