Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5532 ATGAGTCAACTCGGTCTCATATTGCAGGAATCGCTCCGTTCACAAAGAGAATCAAGAACCATTCTCGGTTTATTAACCGAACAAATGGACGGTTTAGATACAGGAACCACCAGAAGGCGAAGTCTCAAAGAACGGCTCAGATTCACCGGAATGGGTTGTTGTGGTGCCACCTGGGTTTTCCGTCCAATTCTCCGTCACGAACATCATCAGCAACAACAACAACAAAACGAAGAAGGAGAAACTACCCAGGAGCAACAACAACAACTACAGGTTCAAGATCAAGATCCGAACCCGGTTGAATTTGAATGTGACGCTCCAGCCGGTCCGTCTGGTTCTGGCATGAATCTAGCGGCGGCATTGGCGGCGGAGCGACAGATGAGGGGATCGGAGGAGACTAGCGGCGGTGGTGGCGAAGGAGCGACGCCGTGGAGGGTTTCGTTGATGAAACTGTTGGAAGAAACGGAAGTGGAAAATGAGAATAATGCTGCGGTGGTTGTGGAGGGGAGTGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGCAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGACATTTTCTAA 666 0.494 MSQLGLILQESLRSQRESRTILGLLTEQMDGLDTGTTRRRSLKERLRFTGMGCCGATWVFRPILRHEHHQQQQQQNEEGETTQEQQQQLQVQDQDPNPVEFECDAPAGPSGSGMNLAAALAAERQMRGSEETSGGGGEGATPWRVSLMKLLEETEVENENNAAVVVEGSDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5532 221 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Mal5g5532 221 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 221 - -
Mal5g5532 221 MobiDBLite consensus disorder prediction 75 95 - -
Mal5g5532 221 PANTHER OS01G0917900 PROTEIN 18 221 - -
Mal5g5532 221 SMART ring_2 173 210 IPR001841 -
Mal5g5532 221 CDD RING-HC 173 210 - -
Mal5g5532 221 Pfam Zinc finger, C3HC4 type (RING finger) 170 215 - -
Mal5g5532 221 MobiDBLite consensus disorder prediction 68 141 - -
Mal5g5532 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 220 IPR013083 -
Mal5g5532 221 SUPERFAMILY RING/U-box 172 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5532 Mal-Chr5 129945920 129946585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5532 21 221 C3H Transcription Factor Family AT4G22250 51.659 1.79e-58 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5532 5 129945920 129946585 Mal4g3182 4 93422050 93422700 PCT