Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5525 ATGCATGTTAATTTTGTATCTTTGTCTTTGCAGTGGAAAGAGAACTGGCATGCAGGCATCAAATGTACAAGGGCTGATTGGCCATTATCAACCATGAAAGCCAAACCATCTAGACAGGAAGGTACTATGGAGGTACCTGTGGCAACCGAATTTCCTAGTCAATCGATCAGTCCATTGAGTGAAACGGTAGTTCAGTCTGTAGATTGTGAGACCTTGTTTAGCAAAATAACAATGTCAAGGCATTTAGATTCTGATACTAAGGATGGTATTGTCGGTCGACAATGCCAAGCATATGTTAAAGGCAAGGGAAGGCGGTGTTTGAGAATGGCAATTAGTAATGATATATACTGTTGTGCGCACTCCTCAAGAGTAAAAAAAGAGAAATGCGTTAAAGTTCGTACTCCAATTTGTGGAGGTACAACTCTTGCAGGTACAATATGTAAGAACCATTCTCTTCCCAACTTCGCCTTTTGCAAGAAGCATTTGTACAATGACGTTAACAAGAGCTCAAATTCAAACGGTCGTACGTTGAAGAGGAAAGCTGAAGAAAGTTGCAGTGGTTCCAAGATGCGGATTCTCAATGATTTGGTTTTAGTACATCCGAAAAATTCATTGGAGGTCAATACAGTGTCGGTCATCGATGATGATGATTCTTTCTGTACAAAGAACATCTTAGGAGAAACACTCATGCTTTCTAGTAATGATCACAATGAAATTGAGGATCTTTGGCGGACAGCCTCTCCTAATAATGCTAATGATCAAAGCTCTTCTTTTGATAATGAGAATGTTAGTAAGTGTAAGATTTGCTTTGAAGAATTTTCTAATGACCAAACACTTGGCGATCATTGGATGGAAAATCATAAAAAGGAAGCAGAATGTTTATTTAGAGGTTATGTTTGTGCCCTTTGTTTAGATTCCTTCACTAACAAGAAACTACTGGAATCACATCTTCAGAAGCGACACTATGTGAACTTTGTTGAACACTGCTTGCTTTTACTATGTATTCCTTGTGGTGAATATTTTGGAAATATGGAGAAATTATGGTTGCATGTTAAGTCAGTTCACCTTGCTGAATTTAAGCTTTCAAAATCTCTGAAAATGATTGAGAAGGGAAATGAGATAAGGGAAACATCCATGCAGCACAAGACAGCAAGCATTGCTGAATTGGAAAAACCCCAATGCTTAGAAGCTGCAAATATTTTGTTTTCTGATATTCAGAAGACTCAAGCCTGGCCAAATAATATCGATATTTTATCAGCTTGCTTGAAGGAAAACTCTACAAATGTATCAGATCCTACAATTGTTGAAATGGAACAAGATGAGTCTCAAACCATCATAAATTCAAACCATATTAGATTAGGGTCGTCGCAAAAGGCTCTAGTGTTATGTGATGACATAAGCTGTGGGAAGGAATCAACTCCAGTGATTTGTGTAGTAGATCAACAAATACTAAACTCTCTTTTCGAGCAAGAGCAATATCTAAGACTTCCTGAGCCTTGGAAGAGTTTTGAATATGGGACAAAACCGAGGCTTGGTCCATCGTCTACTCTTGAATATGAGGGTCAGCAATTGAAATGTTATTGCTCGTCTTCTACATCATGTTGTGAAACTTGTCATCATGTATACGTTTTTGATAGTGATTATGATACTGCAAAAGACATGTTCGGTAAATCAATGCACGGAAAGTTTCCATATGACAGAAATGGTCGAATCATATTGGAGGAAGGTTATCTTGTGTACGAGTGCAATGATAAGTGCAAATGTGATCAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGTGTTAAGTTGGAAGTCTTTAAAACAGATAAAAAGGGATGGGGTGTAAGGGCTGGCCAGGCTATTTCGCGTGGCACATTTGTGTGTGAGTACATTGGAGAAGTTTTAGACGAGCAGGAGGCACACAGCAGACACAAAAGATATGGAAAAGAACATTGTAGTTATTTCTATGATGTTGGTGCTCGTGTTAATGATATGAGTCGATTGATCGAAAGACAGGCTCGATATGTCATTGATTCTACCAAATATGGAAATGTGTCTAGATTCATTAATAACAGTTGTTCACCAAATCTTGTGAATTACCAAGTTCTTGTGGAGAGCATGGATTGTAAGCGTTCACATATTGGTCTCTACGCAAGTCGAGATATTGCTTTGGGTGAAGAATTGACATATAATTATCACTATGAGCTTGTTCCTGGAAAAGGATCTCCTTGTCTTTGTGGATCTTAA 2253 0.3817 MHVNFVSLSLQWKENWHAGIKCTRADWPLSTMKAKPSRQEGTMEVPVATEFPSQSISPLSETVVQSVDCETLFSKITMSRHLDSDTKDGIVGRQCQAYVKGKGRRCLRMAISNDIYCCAHSSRVKKEKCVKVRTPICGGTTLAGTICKNHSLPNFAFCKKHLYNDVNKSSNSNGRTLKRKAEESCSGSKMRILNDLVLVHPKNSLEVNTVSVIDDDDSFCTKNILGETLMLSSNDHNEIEDLWRTASPNNANDQSSSFDNENVSKCKICFEEFSNDQTLGDHWMENHKKEAECLFRGYVCALCLDSFTNKKLLESHLQKRHYVNFVEHCLLLLCIPCGEYFGNMEKLWLHVKSVHLAEFKLSKSLKMIEKGNEIRETSMQHKTASIAELEKPQCLEAANILFSDIQKTQAWPNNIDILSACLKENSTNVSDPTIVEMEQDESQTIINSNHIRLGSSQKALVLCDDISCGKESTPVICVVDQQILNSLFEQEQYLRLPEPWKSFEYGTKPRLGPSSTLEYEGQQLKCYCSSSTSCCETCHHVYVFDSDYDTAKDMFGKSMHGKFPYDRNGRIILEEGYLVYECNDKCKCDQTCPNRILQNGIRVKLEVFKTDKKGWGVRAGQAISRGTFVCEYIGEVLDEQEAHSRHKRYGKEHCSYFYDVGARVNDMSRLIERQARYVIDSTKYGNVSRFINNSCSPNLVNYQVLVESMDCKRSHIGLYASRDIALGEELTYNYHYELVPGKGSPCLCGS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5525 750 ProSiteProfiles Zinc finger C2H2 type domain profile. 332 360 IPR013087 -
Mal5g5525 750 Pfam SET domain 614 734 IPR001214 GO:0005515
Mal5g5525 750 SUPERFAMILY SET domain 454 748 IPR046341 -
Mal5g5525 750 Pfam Zinc finger C2H2-type, 3 repeats 300 387 IPR040689 -
Mal5g5525 750 ProSitePatterns Zinc finger C2H2 type domain signature. 300 321 IPR013087 -
Mal5g5525 750 ProSiteProfiles SET domain profile. 603 735 IPR001214 GO:0005515
Mal5g5525 750 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Mal5g5525 750 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 321 IPR013087 -
Mal5g5525 750 ProSitePatterns Zinc finger C2H2 type domain signature. 334 355 IPR013087 -
Mal5g5525 750 Gene3D Classic Zinc Finger 239 324 - -
Mal5g5525 750 Gene3D SET domain 442 739 IPR046341 -
Mal5g5525 750 PANTHER SET DOMAIN PROTEIN 6 38 - -
Mal5g5525 750 PANTHER SET DOMAIN PROTEIN 388 750 - -
Mal5g5525 750 PANTHER SET DOMAIN PROTEIN 37 379 - -
Mal5g5525 750 ProSiteProfiles Pre-SET domain profile. 524 600 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g5525 750 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 38 - -
Mal5g5525 750 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 388 750 - -
Mal5g5525 750 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 37 379 - -
Mal5g5525 750 SMART c2h2final6 264 287 IPR013087 -
Mal5g5525 750 SMART c2h2final6 298 321 IPR013087 -
Mal5g5525 750 SMART c2h2final6 332 355 IPR013087 -
Mal5g5525 750 SMART preset_2 463 587 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g5525 750 SMART set_7 603 741 IPR001214 GO:0005515
Mal5g5525 750 Pfam Pre-SET motif 467 595 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5525 Mal-Chr5 129888402 129891745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5525 435 748 C2H2 Transcription Factor Family AT2G23740 53.943 1.65e-100 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g5525 Pre-SET 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5525 - - mtr:MTR_4g132610 1055.05