Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5516 ATGTTAACATTTCCGATGAATCTAATAACCGCCACTGGCACCACCAATTGGTCTGATGAAAATGAAGATGATCAAGGACGCCGTGTAATTGTGGATGAAGTTGATTTCTTCTCAAATGATAAGTCACCGTCGCCGGAACAACTTGATCATCATGTTTCAATCATCAAGAATAGTAACAATGAGATTTACGATGATCCTCATTGCAATCTCCGCGCTGACCACGTCAACACTGGTTTACAACTCCTGATTAACACTGGAATTGATCAATCAATGGTGGATGTCGATGATGTATCTTTACTAAATGCTGAAGATAAGCGTGCCAAGACTGAACAGGCGGAGCAATTGCAAGAGGAGCTTGGACGTGTGAATGCAGAGAACCAAAAACTGAAGGAAATGCTGAGTGACATGAGCAGTAGCTACACAAACTTGCATAAACGTTTTATGTCCTTAATGCAACAGCAACAGCAACAGAACCAAACCACAGAACATGATCAGATTGTCAGAGGGAAAGCTGAGGAGAAAGGAGATGGTGTGGTGGCTAGAAAGTTCATGAGTGGTCCAGCAGCAGAAGTAGATGATCGGCAAGTATCAAATTCTTCTGATTCCGATGAAAAATGCACACCTCAGAACAATCAGAAAGAGCCTGATCCAGACTCATCAGAACTAGTACAACTTTTGGACCGAAGTCAGCTTCCCAGATTAAACCCTTCCAACGCTGCTGATCAAGCCAATGCAGAAGCCACTATGAGAAAAGCACGTGTCTCAGTCCGTGCTCGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGAAACCCTTGTCCTCGAGCATATTACAGATGCACAATGGCAATTGGTTGCCCCGTTCGCAAACAAGTTCAACGTTGTGCCGAGGACAGATCAATTTTGATAACAACATATGAAGGGACACATAGCCATCCCCTCCCACCTGCTGCTATGCCAATGGCATCGACCACCGCAGCTGCTGCTACCGTGTTACTATCTGGGTCAATGTCAAGTGCTGATGGAGTGATGAACCCCAACTTACTAGCCAGAATTCTGCCTAATTGCTCTTCTAGCATGGCCACTCTTTCAGCATCAGCACCATTTCCTACTGTGACACTAGACCTTACACGTGATACTACAGACAATAACGGAAATTCTCATTCCCAATTCCAGCTTGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAAGTGATTGCACAAGCACTTTATAACCAATCCAAATTCTCTGGCCTTCAATTGTCTCAAGATGTTGGAGGGTCTTCCCAATTGCATCCAAATCAACAGGCATCATCACTCAGCGCCGCCATCACCGCGGATCCAAACTTCACGGCAGCACTCGCTGCCGCTATCTCCTCCATAATTGGTGCTGCTCCTCCCAACAACAATAACAGTAATCCCAATATCATCAACAGTGCTACCTACAATCAGTAG 1494 0.4498 MLTFPMNLITATGTTNWSDENEDDQGRRVIVDEVDFFSNDKSPSPEQLDHHVSIIKNSNNEIYDDPHCNLRADHVNTGLQLLINTGIDQSMVDVDDVSLLNAEDKRAKTEQAEQLQEELGRVNAENQKLKEMLSDMSSSYTNLHKRFMSLMQQQQQQNQTTEHDQIVRGKAEEKGDGVVARKFMSGPAAEVDDRQVSNSSDSDEKCTPQNNQKEPDPDSSELVQLLDRSQLPRLNPSNAADQANAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAIGCPVRKQVQRCAEDRSILITTYEGTHSHPLPPAAMPMASTTAAAATVLLSGSMSSADGVMNPNLLARILPNCSSSMATLSASAPFPTVTLDLTRDTTDNNGNSHSQFQLGQPQNFGSGQLPQVIAQALYNQSKFSGLQLSQDVGGSSQLHPNQQASSLSAAITADPNFTAALAAAISSIIGAAPPNNNNSNPNIINSATYNQ* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5516 497 SUPERFAMILY WRKY DNA-binding domain 258 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g5516 497 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 22 491 - -
Mal5g5516 497 MobiDBLite consensus disorder prediction 165 179 - -
Mal5g5516 497 Gene3D WRKY domain 250 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g5516 497 Coils Coil 105 132 - -
Mal5g5516 497 MobiDBLite consensus disorder prediction 477 497 - -
Mal5g5516 497 MobiDBLite consensus disorder prediction 201 244 - -
Mal5g5516 497 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 491 IPR044810 GO:0003700
Mal5g5516 497 ProSiteProfiles WRKY domain profile. 260 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g5516 497 MobiDBLite consensus disorder prediction 151 252 - -
Mal5g5516 497 Pfam WRKY DNA -binding domain 266 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g5516 497 SMART WRKY_cls 265 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5516 Mal-Chr5 129795347 129798034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5516 28 475 WRKY Transcription Factor Family AT1G62300 53.320 2.16e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal5g5516 WRKY 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5516 - - mtr:MTR_4g132430 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5516 5 129795347 129798034 Mal5g5516 5 129795347 129798034 ECH
Mal4g3216 4 94050103 94052536 Mal5g5516 5 129795347 129798034 ECH
Mal4g1311 4 19068676 19071044 Mal5g5516 5 129795347 129798034 ECH