Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5500 ATGGAACCCAGTCTTTCCATTGATGAACTTATTCAATATGGTGCTGTTCCTCGTCTTGTTGAACTTCTAGCTATGGACGATTTTCCTGAACGCCAGTTTTTGGCTGCTTGGATGCTTGGAGACATAGCAAGTGGAACTCCTGAGAACACTAAGGTGGTAATTGATCATGGGGCTGTACCATTACTTGTCAATCTACTTAGTTCACCTAGTGTTGATGTTCGGAACGAGGCTGTGTGGGCATTGAGAAACATTGCTGGTGATTCCCCTTGTTGCCGTGATCTTGTTCTCAGTCATGGTACCATGATCCCGCTGTTATCCCACTTGAATGAGCTAGCAGATCTTTCTATGCTGAGAATTGCAACGTTGGCCCTGTCAAACTTTTGCAGGGGCAAGCCACAACCCCCGTTTGAGCAGGTGAGGCCAGCGCTTCCCGCTCTCAAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCCTGACAGATGTATGCTGGGCACTCGCATATCTTTCTGATGGAACAAATGAAAAAAAACAAGCAGTGATCGAGGCTGGTGTATGTGGCAGACTGGTGGAGCTTCTTCTGCACCCATCTCCTTCAGTGCTGTTTCCCGTGCTTCGCACGTTGGGAAATATTGTTGGTGGAGACGATATCCAGACTCAGGCCATTATCGATCATGGTTCACTCCCATGCCTTTTGAGCCTGTTGACCCATAACCACAAGAAAAGTATTATGAAAGGAGCTTGCTGGACTATATCAAACATTACAGCTGGGAACAGAGAGTTTTTGGCTGCTTGGATGCTTGGAGACATAGCAAGTGGAACTCCTGAGAACACTAAGGTGGTAATTGATCATGGGGCTGTACCATTACTTGTCAATCTACTTAGTTCACCTAGTGTTGATGTTCGGAACGAGGCTGTGTGGGCATTGAGAAACATTGCTGGTGATTCCCCTTGTTGCCGTGATCTTGTTCTCAGTCATGGTGCCATGATCCCGCTGTTATCCCACTTGAATGAGCTAGCAGATCTTTCTATGCTGAGAATTGCAACGTTGGCCCTGTCAAACTTTTGCAGGGGCAAGCCACAACCCCCGTTTGAGCAGGTGAGGCCAGCGCTTCCCGCTCTCAAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCCTGACAGATGTATGCTGGGCACTCGCATATCTTTCTGATGGAACAAATGAAAAAAAACAAGCAGTGATCGAGGCTGGTGTATGTGGCAGACTGGTGGAGCTTCTTCTGCACCCATCTCCTTCAGTGCTGTTTCCCGTGCTTCGCACGTTGGGAAATATTGTTGGTGGAGACGATATCCAGACTCAGGCTGTTATTGAAGCTGGTCTGATTGCCCCCCTAGTCAATCTTCTTCAGAGTGAGGAGTTTGACATTAAAAAAGAAGCAGCATGGGCACTCTCTAATGCTACATCTGGCGGTACTCATGAGCAAATCAAGTACTTGGCGAGCCAAGGCTGCATTAAGCCTCTGTGTGATTTTCTTGTTTGCCATGATCCAAAAATTGTTACTGTCTGTTTACAAGGTCTTGAGAATTTTCTGAAGGTTGGAGAAGCGGAGAAAAGCTTTGGTAACACGGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTTGAAAAGATTGACAACTTGCAGAGTCACGACAACTTTGAAATTTATGAGAAGGCTTTCAAAGTTCTCGAGACATATTTGTTGGAAGATGAAGATGAGACACTACCTCCAGGCAATGGTTCTCAACCTGGTTTTAACTTTTGGGGTAGCGACCCTCCGGTCCTATCTGGTGGGTTCAATTTCAGCAGAATGTGA 1845 0.4618 MEPSLSIDELIQYGAVPRLVELLAMDDFPERQFLAAWMLGDIASGTPENTKVVIDHGAVPLLVNLLSSPSVDVRNEAVWALRNIAGDSPCCRDLVLSHGTMIPLLSHLNELADLSMLRIATLALSNFCRGKPQPPFEQVRPALPALKRLVFSNDEEVLTDVCWALAYLSDGTNEKKQAVIEAGVCGRLVELLLHPSPSVLFPVLRTLGNIVGGDDIQTQAIIDHGSLPCLLSLLTHNHKKSIMKGACWTISNITAGNREFLAAWMLGDIASGTPENTKVVIDHGAVPLLVNLLSSPSVDVRNEAVWALRNIAGDSPCCRDLVLSHGAMIPLLSHLNELADLSMLRIATLALSNFCRGKPQPPFEQVRPALPALKRLVFSNDEEVLTDVCWALAYLSDGTNEKKQAVIEAGVCGRLVELLLHPSPSVLFPVLRTLGNIVGGDDIQTQAVIEAGLIAPLVNLLQSEEFDIKKEAAWALSNATSGGTHEQIKYLASQGCIKPLCDFLVCHDPKIVTVCLQGLENFLKVGEAEKSFGNTGDVNLYAQMIDDAEGFEKIDNLQSHDNFEIYEKAFKVLETYLLEDEDETLPPGNGSQPGFNFWGSDPPVLSGGFNFSRM* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5500 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 480 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 400 438 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 444 480 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 46 85 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 217 255 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 369 396 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 142 169 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 173 211 IPR000225 GO:0005515
Mal5g5500 614 Pfam Armadillo/beta-catenin-like repeat 273 312 IPR000225 GO:0005515
Mal5g5500 614 PANTHER IMPORTIN ALPHA 2 260 - -
Mal5g5500 614 PANTHER IMPORTIN ALPHA 446 603 - -
Mal5g5500 614 PANTHER IMPORTIN ALPHA 260 452 - -
Mal5g5500 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 326 IPR000225 GO:0005515
Mal5g5500 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 57 99 IPR000225 GO:0005515
Mal5g5500 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 259 IPR000225 GO:0005515
Mal5g5500 614 Gene3D - 260 577 IPR011989 -
Mal5g5500 614 Gene3D - 1 259 IPR011989 -
Mal5g5500 614 SUPERFAMILY ARM repeat 261 576 IPR016024 -
Mal5g5500 614 PANTHER IMPORTIN SUBUNIT ALPHA 260 452 - -
Mal5g5500 614 SUPERFAMILY ARM repeat 2 260 IPR016024 -
Mal5g5500 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 14 57 IPR000225 GO:0005515
Mal5g5500 614 Pfam Atypical Arm repeat 539 585 IPR032413 -
Mal5g5500 614 SMART arm_5 441 481 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 172 212 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 131 170 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 214 255 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 399 439 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 358 397 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 314 356 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 3 44 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 87 129 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 484 524 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 273 313 IPR000225 GO:0005515
Mal5g5500 614 SMART arm_5 46 86 IPR000225 GO:0005515
Mal5g5500 614 PANTHER IMPORTIN SUBUNIT ALPHA 2 260 - -
Mal5g5500 614 PANTHER IMPORTIN SUBUNIT ALPHA 446 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5500 Mal-Chr5 129629477 129641986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5500 369 546 U-box Gene Family AT5G67340 28.261 3.96e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5500 K15042 - gmx:100808498 420.624