Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5479 ATGATGCAACCAGGAGGACCGGGTATGCCACCACCCAACATGGCCCAACAATACCATCAACAGCAACAACAACCCTACATGATGATGCCTCCTCAGCCTCAACCACAAACCCAACTTCCTCAGATGTGGGGCCCTTCCGCTCAACCTCCTCCTCAGCAATCCGCGCCTCAGCAACAGGCTCCTCCTTCCACCGCCGATGAGGTCCGTACTCTCTGGATCGGCGATTTGCAATATTGGATGGACGAGAACTATCTCTATCAATGTTTCTCTCACACCGGGGTTGGATCTGTTAAAGTTATTCGCAATAAGCAGACTAATGTACCTGAAGGTTATGGGTTTCTTGAGTTTACTAGCCGTGCAGGTGCTGAGAGAGTACTTCAAACCTATAATAACACCATTATGCCAAATGGTGGCCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCTGGTGAGAAGCGTCACGATGATTCTCCAGATTTCACTATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTATCATCTGACGGAAGTGTTTAGAACTCGGTATAATTCGGTTAAGGGGGCCAAAGTTGTAATTGACAGGACCACCGGCAGGACAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAGAGTGAGCAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCCACTAGAGCTATGCGTATTGGACCAGCCTCTAACAAAAACCTTAGCACACAGACGTCAAAAGGGTTGCTAGAGGCTCTCCCATCTCGAGCCTGGAACTGA 786 0.4733 MMQPGGPGMPPPNMAQQYHQQQQQPYMMMPPQPQPQTQLPQMWGPSAQPPPQQSAPQQQAPPSTADEVRTLWIGDLQYWMDENYLYQCFSHTGVGSVKVIRNKQTNVPEGYGFLEFTSRAGAERVLQTYNNTIMPNGGQNFRLNWATFSSGEKRHDDSPDFTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRAMRIGPASNKNLSTQTSKGLLEALPSRAWN* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5479 261 Gene3D - 160 236 IPR012677 -
Mal5g5479 261 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 247 - -
Mal5g5479 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 148 IPR000504 GO:0003723
Mal5g5479 261 CDD RRM2_SECp43_like 160 239 - -
Mal5g5479 261 Gene3D - 68 147 IPR012677 -
Mal5g5479 261 MobiDBLite consensus disorder prediction 28 57 - -
Mal5g5479 261 MobiDBLite consensus disorder prediction 1 65 - -
Mal5g5479 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Mal5g5479 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 135 IPR000504 GO:0003723
Mal5g5479 261 SUPERFAMILY RNA-binding domain, RBD 28 149 IPR035979 GO:0003676
Mal5g5479 261 SMART rrm1_1 70 144 IPR000504 GO:0003723
Mal5g5479 261 SMART rrm1_1 162 236 IPR000504 GO:0003723
Mal5g5479 261 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 17 247 - -
Mal5g5479 261 SUPERFAMILY RNA-binding domain, RBD 155 249 IPR035979 GO:0003676
Mal5g5479 261 CDD RRM1_SECp43_like 70 149 - -
Mal5g5479 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5479 Mal-Chr5 129431526 129433493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5479 71 242 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 3.48e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5479 - - gmx:100796848 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5479 5 129431526 129433493 Mal4g4139 4 117871956 117876875 PCT