Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5457 ATGGATACTCTCTCACTTTCACGTCTTCTTCTTCCTCCTCTCCGTCTTCTTTCTTCATCTGAAAATTCTCGTTCACACAAAAACAACCATTTTGTGAAACTATTCTCCTCCTCCTCCTCGTCCACAACAACAACAGCAACTCCACTAGCCATTGCCATTCCTCCTACTGCGGAGGTGGATGATACAGTCGGAACAACTCCCACTCTCAGACAATTATGTCAATCTCATGTTCCCGACCAACTACTTCAAAGGATGGAAGAGGTTGGATATGTCATGCCTACACATGTCCAAAAACAAGCATTGCCTCATCTTTTTTCCGGCCGTGACTGCATACTTCATGCCCAGACAGGTTCTGGGAAGACACTTACCTACTTGCTTTTGATCTATTCCATCATCAACACTAGAAAATCTTCTTTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTACCAAGGTTGCTAGGATACTGGCAGCAAAGCCAACCGGAGTTGAAGGGGAGCAGAGATCATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCTGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGCCAAATGCTTGAAAGACATCTTTTTTCGCTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTCCAGAAGATTTTGACCTCATATTCATCTTGTAACAACCGTCAGACAGTTTTTGCCAGTGCTTCTATACCACAGCACAATCGATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCATGTTAGTCCAGTGGAGCCCATGCCGTCCCGTCTATCTCATAGATTTATAGTATGTGATATAAAAAGAAAACTGCAAACCTTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTGGCATTATATTTGTTAGTGAGCAGTCGGAGAAGTCGAAAAAGGCTGGAAATGATCCATCGACGTCCCTTGTGATTGACTTTCTAAAGACATCATATCATGGTTCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAAGTTAGGAAAGGTGGCGGCTATCTTCTGGTGGCAACAGATGTAGCAGCTAGAGGAGTTGACTTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCACAGATTATCTTCATCGAGCAGGGAGGACCTGTAGAAAACCCTTTTCTGATGTGAATTGTACTGTCACCAGCATTATAGTCTCTGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGGTTTGTCTGTGAAGAGCTTAATCCATAA 1410 0.4319 MDTLSLSRLLLPPLRLLSSSENSRSHKNNHFVKLFSSSSSSTTTTATPLAIAIPPTAEVDDTVGTTPTLRQLCQSHVPDQLLQRMEEVGYVMPTHVQKQALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTRKSSFQALVLVPTRELGMQVTKVARILAAKPTGVEGEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLERHLFSLGTLRVLVVDEVDFIFNSSKQVSSLQKILTSYSSCNNRQTVFASASIPQHNRFLNEAVQQKWTKRDVIHIHVSPVEPMPSRLSHRFIVCDIKRKLQTLLSLIQSDAPESGIIFVSEQSEKSKKAGNDPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDFPEMTHIYNFDLPKTATDYLHRAGRTCRKPFSDVNCTVTSIIVSEERFVLQRYENELRFVCEELNP* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5457 469 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 467 - -
Mal5g5457 469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 469 IPR001650 -
Mal5g5457 469 CDD SF2_C_DEAD 300 431 - -
Mal5g5457 469 Gene3D - 19 285 IPR027417 -
Mal5g5457 469 Pfam DEAD/DEAH box helicase 94 267 IPR011545 GO:0003676|GO:0005524
Mal5g5457 469 Pfam Helicase conserved C-terminal domain 312 431 IPR001650 -
Mal5g5457 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 435 IPR027417 -
Mal5g5457 469 SMART helicmild6 349 433 IPR001650 -
Mal5g5457 469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 283 IPR014001 -
Mal5g5457 469 CDD DEADc 81 276 - -
Mal5g5457 469 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 33 467 - -
Mal5g5457 469 SMART ultradead3 89 303 IPR014001 -
Mal5g5457 469 Gene3D - 296 467 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5457 Mal-Chr5 129169235 129174386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5457 78 467 Eukaryotic Initiation Factors Gene Family AT1G72730 27.068 3.96e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5457 - - mtr:MTR_4g131750 769.615