Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5448 ATGATGGTAGTGGAGGATCGTTTGGTGGGTGAAGATGTTTCCGAAGAAGGTTTTCCGGTTGGTATGCATGTTCTGGCTGTTGATGATGATCAGACTAGTCTCAAAGTGTTGGAGAAGCAACTTCTCACATGCAAGTATAATGTTACTACAACTACAAGGTCAGTGAAAGCGTTAGAAATGCTGAGGGAAAAGAGAAATATGTTTGACCTTGTTATTAGTGATGTAAACATGCCAGAAATGGATGGATTCAAGCTCCTTGAGCAAGTTGGACTTGAAATGGACCTACCTTTCATTATGTTGTCAGGAAATGATGATAGAAAGAGGGTGATGAAAGGTGTGATGAAAGGCGCTTGCGACTATCTAGTGAAACCAATCCGAATTGAAGATCTTAAGAACATATGGCAACATGTAGTAAGAAAGAAGATTGAAAGCAAGGATCAGAATAAAGATATCATTACTGATGGGGTATGTAGTCAAGACACCTCATCTGAAAATATTGCTAACAAGAATAAAATGCGTGGACAAAAAAGAAAGGAACAAAGTGAGGAGGAAGAAGCAAATACTGATGAAGAGAATGATGAGGAACATTCAACTCGGAAGAAGCCTCGTTTCGTTTGGGATAATGAGTTGCATAAAAAGTTTGTTTCTATAGTTAATCTACTTGGCATTGACAAGGCTTATCCTAAGAAAATTCGTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTAGCTAGCCATTTGCAGAAATACAGACTTAGTCTCAAAAGGCCATCTAAACAGGCTAGAGTAGATGCTGCACTGGATACTCACCAGCAAAAGGGTTCAGTAGGTGGATATGGAGATTTTCATACCTTACCTGGATCAAGAAGAATCTTAAGCAGCACATTGCCAACATATGCATCTAGTGACATGTTTTGTCGGCTGAACGCACCATCTAGTTTGAATTTGAGAGGAATGAGTTCTTCTGCACTAGTCCCTCCATTTCAGTCTCAAAACATTCCCAGTTTTAAGCAGCCGGTGTTTTCTGCAAGTGAAAGCTTGAGTTTTTTACAGGGCGTTCGAACGTCTGTGGAAATTAACCAGTTTCAACGGAACATTTATCCACCTGGTAACATGAACTTAAGTCCAATTAATGATTCAAGTGCATTTACAGTTTCATCTGGCTTCCAAGACACCAGGGCTACTGTTAATAATGCAAATAGTTCTCTTTCTTGGATCTCAAGCAATCACCTACAAACACATAATTCAGGTGCATTTGTAAATCACTCTTCTGTAGGAGGTGTTGTTGTGGAACCAAAATCTTTTAACCCTGCTACAAGTGGTTCCTCTAACTTTGCTTCCAATCCTTTTCCATTGAGTGAGGATTATAACAATACTCACAATAGCTTAAAGTTTGCCTCTCTCAGTTCCCATTTTACGGAAAGTCCAGTTGATTTTTCTTCGACACGCATCAATGCTGTTCCTTTGGAGGAAGCGACACAATGTGAAGATGGCTTACTTGGGAATGTTGTAAAGGCTTCATGTTACAAGCAGCAGAAAAATGCGGATTCATCCTTCAACAATACCTTGGATTCTCTTGCTTTTTCTAATGGAGATGCTAGTTCCATGGTAAATAGTGTACCCCGAACTAATAGTCCATTAATCACTCAGATGCCTGGAGTTGAGAAATTTTATTCAGATGCAAGAATTATGGAACCACGTGGTGATTGCTTTTTTGAGCAACTGCTTGCTCTAGATGGATTCGTTGAGAATAGTTGTCGGAGTCCATCTGATTTACCAAGAATCTAG 1794 0.3958 MMVVEDRLVGEDVSEEGFPVGMHVLAVDDDQTSLKVLEKQLLTCKYNVTTTTRSVKALEMLREKRNMFDLVISDVNMPEMDGFKLLEQVGLEMDLPFIMLSGNDDRKRVMKGVMKGACDYLVKPIRIEDLKNIWQHVVRKKIESKDQNKDIITDGVCSQDTSSENIANKNKMRGQKRKEQSEEEEANTDEENDEEHSTRKKPRFVWDNELHKKFVSIVNLLGIDKAYPKKIRDLMNVEGLTRENVASHLQKYRLSLKRPSKQARVDAALDTHQQKGSVGGYGDFHTLPGSRRILSSTLPTYASSDMFCRLNAPSSLNLRGMSSSALVPPFQSQNIPSFKQPVFSASESLSFLQGVRTSVEINQFQRNIYPPGNMNLSPINDSSAFTVSSGFQDTRATVNNANSSLSWISSNHLQTHNSGAFVNHSSVGGVVVEPKSFNPATSGSSNFASNPFPLSEDYNNTHNSLKFASLSSHFTESPVDFSSTRINAVPLEEATQCEDGLLGNVVKASCYKQQKNADSSFNNTLDSLAFSNGDASSMVNSVPRTNSPLITQMPGVEKFYSDARIMEPRGDCFFEQLLALDGFVENSCRSPSDLPRI* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5448 597 Pfam Myb-like DNA-binding domain 206 253 IPR001005 -
Mal5g5448 597 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Mal5g5448 597 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 591 - -
Mal5g5448 597 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Mal5g5448 597 CDD REC_typeB_ARR-like 24 138 - -
Mal5g5448 597 SUPERFAMILY CheY-like 21 144 IPR011006 -
Mal5g5448 597 Gene3D - 197 258 - -
Mal5g5448 597 MobiDBLite consensus disorder prediction 153 200 - -
Mal5g5448 597 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Mal5g5448 597 PIRSF RR_ARR_type-B 2 563 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mal5g5448 597 Gene3D - 22 152 - -
Mal5g5448 597 SMART REC_2 22 134 IPR001789 GO:0000160
Mal5g5448 597 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 591 IPR045279 GO:0009736
Mal5g5448 597 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Mal5g5448 597 SUPERFAMILY Homeodomain-like 198 258 IPR009057 -
Mal5g5448 597 MobiDBLite consensus disorder prediction 153 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5448 Mal-Chr5 129088517 129092210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5448 2 375 Response Regulator Gene Family AT2G25180 46.891 7.81e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g5448 Response_reg 9.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5448 - K14491 mtr:MTR_4g131580 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5448 5 129088517 129092210 Mal5g5448 5 129088517 129092210 ECH