Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5447 ATGATGGTTGTGGAGGATCGTTCGATGGTTGAAGACGATTTTGGAGAAGGTTTTCCGGTGGGTATGCGTGTTCTGGCTGTTGATGACGATCAAACTTGTCTCAAAGTGCTAGAGAAGTTTCTTCTCATGTGCAACTATAATGTTACTACAACTACAAAGTCAGTGGAAGCACTAGAATTGTTAAGGGAAAAGAGAAACATGTTTGACCTTGTTATTAGTGATGTAAACATGCCAGAAATGGATGGATTCAAGCTCCTTGAGCAAGTTAGACTTGAAATGGACCTACCTTTCATTATGTTGTCAGGAAATGATGATAGAAAGAGGGTGATGAAAGGTGTGATGAAAGGCGCTTGCGACTATCTAGTGAAACCGATCCGAATTGAAGATCTTAAGAACATTTGGCAACATGTAGTGAGAAAGAAGATTGAAAGCAAGGATCAGAATAAAGGTATCATTACTGATAGGGTATGCAGTCAAGCCACCTCATCTGAAAATATTGCTAACAAGAATAAAATGCGTGGACAAAAAAGAAAGGAACAAAGTGATGAGGAAGAAGCAGAAGCAGAAGAAAATAATGGTGAAGAGAACAACGAGGAACGCTCGACTCGGAAGAAGCCTCGTATCGTTTGGAATGATGAGTTGCATAAAAAATTTGTTTCTATAGTTGCTCAACTCGGCCTTGACAAGGCTTATCCTAAGAAAATTCGTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTTGCTAGCCATTTGCAGAAATTCAAACTTAGTCTCAAAGAGACATCTAAACAGGCTAGAGTAGATGCTGCATTGGATCCTCACCTGCAAAAGGGTTCAGTAGGCGGATATGGAGATTTTTGTACCTTACCTGGATCAAGAGCAAGCTTAAGCAGCACACTGCCAACATATGCATCTAGTGACATTTTTTGTCGGTTGAACGCACCATCTAACACACCATCTAATTTGAACTTAAGAGGAATGAGTTCTTCTGCACTAGTGCCTCCACTTCAGTCTCAAAATATTCCCAGCTTCAAGCAGCCGATGTTTTCTGCAAGTGAAAGCTCGAGAGTCTTAAAGGGCGTTCAAACGTCAATGGAAATTAACCAGTTTCAGCAGAATATTTATCCATTTGGTAACATGTATTTAAGTCCAACTGATGATTCAAGTGCATTTACAGTTTCTTCTGGCTTCCAAGACATCAAAGCTAAAGTTAATAATGCAAGTAGTTCTCTTTCTTGCATCTCAAGCAATCACCTACAAACACGTAATGCAGGAGCATTTATAAATCACTCTTCTGTTGGAGGTGATGTTGTGGAGCAAAAACCTTTCAACCCTGCTACAAGTGGTTCCTATAACTTTGCTTCCGATCCTTATCCATTGAGTGAGGATTTTAACAATGATCAAATTTCTCACAATAGCTTAAATTTTGCCTCTCCCGGTTCTCATTTTAGGAAAAGTCCAGTAGATTTTTCTTCGACACGCATCATTGATGTTCCTTTTGAGGAAGCGATGCATTATCAAGATGGCTTACTTGGCAATGTTGTAAAGGCTTCATGTTACACGCATCAGCAAAATGCGGGTTCTTCCTTCAACAGAACCTTGGATTCTCTTGCTTCTTCTAATGGAGACACTAGTTCCATGGTGCATAGTGTACCCCAGACTAATAGTCCATTAAACACTCAGATGCATCAAGTTGAGAAATTTTATTCAGATGCAAGAATTATGGAACGTGATTGCTTTCTTGAGCAACTGTTTGCTCTAGATGGATTCATTGAGAATAGTTGTCTTCCCTTGGATGACACAATAGGTGAAGCGGTTAAACAGCTGAATCCTTCTGATTTACCAAGAATCTAG 1860 0.3973 MMVVEDRSMVEDDFGEGFPVGMRVLAVDDDQTCLKVLEKFLLMCNYNVTTTTKSVEALELLREKRNMFDLVISDVNMPEMDGFKLLEQVRLEMDLPFIMLSGNDDRKRVMKGVMKGACDYLVKPIRIEDLKNIWQHVVRKKIESKDQNKGIITDRVCSQATSSENIANKNKMRGQKRKEQSDEEEAEAEENNGEENNEERSTRKKPRIVWNDELHKKFVSIVAQLGLDKAYPKKIRDLMNVEGLTRENVASHLQKFKLSLKETSKQARVDAALDPHLQKGSVGGYGDFCTLPGSRASLSSTLPTYASSDIFCRLNAPSNTPSNLNLRGMSSSALVPPLQSQNIPSFKQPMFSASESSRVLKGVQTSMEINQFQQNIYPFGNMYLSPTDDSSAFTVSSGFQDIKAKVNNASSSLSCISSNHLQTRNAGAFINHSSVGGDVVEQKPFNPATSGSYNFASDPYPLSEDFNNDQISHNSLNFASPGSHFRKSPVDFSSTRIIDVPFEEAMHYQDGLLGNVVKASCYTHQQNAGSSFNRTLDSLASSNGDTSSMVHSVPQTNSPLNTQMHQVEKFYSDARIMERDCFLEQLFALDGFIENSCLPLDDTIGEAVKQLNPSDLPRI* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5447 619 PIRSF RR_ARR_type-B 1 596 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mal5g5447 619 MobiDBLite consensus disorder prediction 163 203 - -
Mal5g5447 619 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Mal5g5447 619 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 600 IPR045279 GO:0009736
Mal5g5447 619 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 600 - -
Mal5g5447 619 CDD REC_typeB_ARR-like 24 138 - -
Mal5g5447 619 Gene3D - 201 263 - -
Mal5g5447 619 Coils Coil 169 198 - -
Mal5g5447 619 SUPERFAMILY CheY-like 21 144 IPR011006 -
Mal5g5447 619 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Mal5g5447 619 SMART REC_2 22 134 IPR001789 GO:0000160
Mal5g5447 619 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Mal5g5447 619 Gene3D - 21 151 - -
Mal5g5447 619 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5447 Mal-Chr5 129078899 129082351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5447 18 375 Response Regulator Gene Family AT2G25180 47.696 1.56e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g5447 Response_reg 2.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5447 K14491 - mtr:MTR_4g131580 896.345