Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5408 ATGTTTGACCGCAGTGATTACAAATCACAGTACATGGATGGCCAGCGAGAAAGTTCTTTTAGGTGGGATTTCTTGGATTCTAAACTATCTTCATCTTCTGATGTTAGAGTTACAAAATCTGGGTTTGGTATTGATAAATTAAGCCATGGTAGTCATGGAAGCAGTACAACCTCTGGGTCTTTTAAAAAAGGAATGAGAAAGGGATCTGAAGGACTGAAGTTAATTGGTCGATCACTTGGACTGGGGGTATCTAAGGCGGTGTTTCCAGAAGATCTTAAAGTGTCTGAGAAGAAGATATTTGATCCCCAAGACAAATTTTTACTCTTATGGAATAAGTTATTTGTTATCTCATGCATTTTTTCTGTGTTTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATCAATTACACTGTCTGGGTATAGACCGAAAGTTGGCGATAGTAGTCACCACCTTGAGGACAGTCATTGATGCTTTCTATCTGCTAAACATGGCTCTCCAATTTCGTACTGCTTACATTGCTCCATCATCTCGTGTCTTTGGGCGGGGCGAGCTTGTGATAGATTCGGCACAGATAGCCAAGCGATACTTGCGACGATATTTCATCATCGATTTCCTATCTGTGTTGCCAGTACCACAGATTGTTGTTTGGAGATTTCTTCAGAGGTCAAAAAGTTCTGATGTACTAGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTATATTCCTAGGTTTCTTCGAATGGTACCATTAACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGCCGAAACTGCATGGGCAGGGGCTGTATATTATTTGCTGTTATACATGCTTGCCAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCAATTGAACGCAATGACTCATGCTGGCAAAATGCTTGCAGTGACAATGGGTGCAAGAAAAACTACTTGTATTGTGATAACCAGCACACGGAAGGTTATAGTGCCTGGCAAAATAGAAGCAAAGCTATTTTTAAGTCACAGTGCTCTGTAGATGATGATCCTCCACCTTTTGATTATGGAATTTTTAAGCAAGCCTTGTCGTCTGGTATCATTTCATCCAAGAAGTTCATCACAAAATATCTTTATTGTTTATGGTGGGGGCTCCAAAATTTAAGTACCCTTGGTCAGGGGCTTCAAACTAGCACATATCCTGGAGAGGTTATCTTTTCAATAGCACTTGCCATATTAGGCCTCATCCTCTTCGCGCTTCTGATTGGCAACATGCAGACATATCTTCAGTCCCTTACCCTTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAATGGATGCATCATCGCTTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGTTGGCAACACGTGGCGTAGACGAAGATATTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCTTTAGTGAGGAGGGTATATGAAGAGATGAATAAAGAAATAATGGATGCTATATTTGCTATGATTGATCGGAAACTTGCTGGAGAGAAGGTTGATGAATCATTTGTCATCAACACCTTGGATTTCTACTTAAAATTTGACGAGTGCACAAGAAAAAACAGGACAAAGGAAGAGAAAATGGATTGCAGTCCAGATGTTTTGTCAAAGAAAATCAACTTAATAAGCTCTGATGGGGATGTGTTTGAAGTTGACTATGGTATGGCACTTATGTCATACAGATTTAAGGACATTACTGAGACCATTTCTGCTGGTGATGTTGATACCATTTCTGTTCATAAAATGAGTAGCAAAATGTTGACAATGGTCATTGAATACTGCAAGAAGCACAAGAACAACAATGGACTGAAGGATTTTGAGCTCAAGGACTGGGATGCTCAATTTGTCGATGTTGACCCTAAAACTCTGCTTGATCTTACAACAGCTGCATGTTACATGAAAGTTGATAGTCTGGTGAAGCTGACTTGGAGTAAAGTAGATAACTTGTTGAAAGGCAAGACACCAGAGGAAATTGCCGAGATCTTTGGAGCTGTAGATGACCTTGATCTTCAACATATTGTTAATATTCTAGGAAAATGCAAACTTCTTTTAACTTTTCCTAAATGA 2157 0.3982 MFDRSDYKSQYMDGQRESSFRWDFLDSKLSSSSDVRVTKSGFGIDKLSHGSHGSSTTSGSFKKGMRKGSEGLKLIGRSLGLGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCIFSVFVDPLFFYLPVINDQLHCLGIDRKLAIVVTTLRTVIDAFYLLNMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPVPQIVVWRFLQRSKSSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAVYYLLLYMLASHIVGAFWYLLAIERNDSCWQNACSDNGCKKNYLYCDNQHTEGYSAWQNRSKAIFKSQCSVDDDPPPFDYGIFKQALSSGIISSKKFITKYLYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAILGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRRYDQYKWLATRGVDEDILVQSLPKDLRRDIKRHLCLALVRRVYEEMNKEIMDAIFAMIDRKLAGEKVDESFVINTLDFYLKFDECTRKNRTKEEKMDCSPDVLSKKINLISSDGDVFEVDYGMALMSYRFKDITETISAGDVDTISVHKMSSKMLTMVIEYCKKHKNNNGLKDFELKDWDAQFVDVDPKTLLDLTTAACYMKVDSLVKLTWSKVDNLLKGKTPEEIAEIFGAVDDLDLQHIVNILGKCKLLLTFPK* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5408 718 Gene3D - 111 431 - -
Mal5g5408 718 PRINTS EAG/ELK/ERG potassium channel family signature 166 175 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mal5g5408 718 PRINTS EAG/ELK/ERG potassium channel family signature 419 428 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mal5g5408 718 PRINTS EAG/ELK/ERG potassium channel family signature 469 476 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mal5g5408 718 PRINTS EAG/ELK/ERG potassium channel family signature 401 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mal5g5408 718 PRINTS EAG/ELK/ERG potassium channel family signature 375 392 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mal5g5408 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 524 - -
Mal5g5408 718 SMART skp1_3 566 665 IPR001232 GO:0006511
Mal5g5408 718 Pfam Skp1 family, tetramerisation domain 567 629 IPR016073 GO:0006511
Mal5g5408 718 Pfam Ion transport protein 109 433 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mal5g5408 718 Gene3D Potassium Channel Kv1.1; Chain A 565 705 IPR011333 -
Mal5g5408 718 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 17 524 - -
Mal5g5408 718 SUPERFAMILY cAMP-binding domain-like 435 505 IPR018490 -
Mal5g5408 718 SUPERFAMILY Voltage-gated potassium channels 101 428 - -
Mal5g5408 718 SUPERFAMILY POZ domain 568 631 IPR011333 -
Mal5g5408 718 Gene3D Helix hairpin bin 434 497 - -
Mal5g5408 718 SUPERFAMILY Skp1 dimerisation domain-like 635 698 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5408 Mal-Chr5 128719769 128729936 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5408 8 543 Ion Channels AT2G23980 69.963 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5408 K05391 - gmx:100784309 842.417