LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g5399	ATGAAGCCTTATATTTACTTGTTACCTGTGTCTTGGTATGTATACCTTCATCTGCTTCACCTTTTTACCTTAACCTTAATGTGTTTTGGTCCAAACAGAACTGTGACAATGGCACTAGGAAACCAAACCGATCATTTGGCGTTGCTCCAATTCAAGAGAATAGTATCTAATGATCCGTATGGTATCCTAGATTCTTGGAATAGTTCAACCCACTTTTGCAAATGGCATGGAATCCTATGCAGTCCGAAGCATCAAAGAGTTACAAACTTGAAGTTGCAAGGATACAAATTGCATGGATCAATATCTCCGTATATTGGCAATCTCTCTCATTTGAGGTACCTCAACCTTGGAAACAACAGCTTCTACGGTAACATTCCGCAAGAATCAGGTCGTTTGTCACAATTAAGGGTTCTCCTTCTACTCAACAACTCGTTGTCCGGAGAATTTCCTATAAACTTGACAAAGTGCTATGAGCTCAAAAACATAGACTTATCTGGAAACAATCTGATTGGAAAATTACCTAGCCAAATTGGTTCCCTTCAAAAGCTTCAAAATATCTTTATACACACAAACAATTTATCCGGAAAAATCCCACCATCCATAAGGAATCTTTCATCCCTTACTCTTTTTTCGATAGGTTATAATAACTTGGTGGGAAATATTCCACAAGAAATGTGCTTCCTAAAAGAGTTGAAGGCTATATCATTGCATGCCAACAAATTGTCTGGTACATTTCCTTCTTGTCTTTATAATATCTCATTTCTTACTATGATCTCAGCTACAGAGAATAACTTTAGTGGCTCTCTTCCACCCAATATGTTCAACACCCTCCGCAATCTCCAATTCTTTGCTGTTAGCAATAATCACATGTCAGGTCAAATCCCTATTTCCATTACAAATGCTTCTAGTTTGACGTTATTTGATATCATTCAAAACCATTTTGTCGGACAAGTTCCTAGTCTAAGGAAGCTACAAAGTCTTCGGTGGCTAGGTATGGCTGCCAACAATATGGGTGACAATTCCACGAAGGATTTGAATTTCTTAAAGTCATTGACAAACTGTAGTAAGTTGCAAATGCTCTCTTTTTCCATTAATAATTTTGGAGGTAGTTTGCCAAATTTTATTGGTAATTTATCCACGACACTTAGTCAATTATTTATTGGGGGTAATCAAATATATGGACAAATTCCTTCAGAATTAGGAAATCTAATTGGCTTGAGTCTCTTAACCATGGAAAATAACAAGTTGGAAGGAACAATTCCAACTACTTTTGGGATGTTTCAAAAGATGGAAAAGTTAGCATTGGGTAGAAACAATTTATCCGGGGATATACCTGCAGCCTCTATAGGAAACCTTAGTCGATTGTATTTTTTAGAACTATGTGTAAATAGGATAGAAGGGAACATTCCTCCAGATATAGGAAATTGTCAAAATTTACAATACCTAAACCTTTCACAAAACAACCTTAGAGGATCCATACCCTTAGAAGTTTTCAGTTTGTCGTCTTTATCAAACTCGTTGGATTTTTCACGAAACTCATTGAGTGGTAGCTTACCAAAAGAATTGGGTATGCTAAAAAGTATCGATTGGCTAGATGTCTCGGAGAATCATTTGTCTGGGGACATTCCTGAAACCATTGGTGAGTGCATAAGCTTAGAATACCTTCATCTACAAGGGAACTCCTTCAATGGAACAATACCATCTTCTTTGGCTTCTCTCAAAGGTCTGCGATATTTAGACCTTTCAAGAAATCAATTGTATGGACCAATTCCCAATTTTGTGCAGAACATTTATGGCTTAGAACACTTGAATATTTCTTTTAACATGTTGGAAGGTGAGGTACCAACAAACGGTGTCTTTGGAAATGTAACCCAAGTAGCAATGATTGGAAACAATAAGCTTTGTGGAGGTGTTTCAGAGTTGCATCTACCATCATGCCCTATCAAGGGTAGGAAACACGCAAAAAACCATAATTTCAGGTGTATAGCGGTGACAGTTAGTGTGGTTTCTTTTCTTCTCATGCTTTCATTTACTGTAGCTATATACTGGATAAGGAAAAGAAACCAAAAACCATATATTGATTCACCTACAATTGGTCAACTAGATAAGGTTTCATACCAAGAATTACACCAAGCAACCAATGGGTTCTCAGATAGAAACTTGATTGGATCAGGAAGTTTCGGTTTTGTCTATAGAGGAAATCTTGTGTCAGAAGATAATATTGTTGCCGTAAAGGTCTTGAACCTCCAAAAAAAGGGAGCTCACAAGAGTTTCATTGATGAATGTAATGCACTCAAAAGCATTAGACACCGAAATTTAGTTAAGATTTTAACATGTTGTTCTAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTTATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCCAATATTTTAAATGAAGAACATCCAAAAACATTGGACCTCGTTCATAGGTTAAACATCATTATCGATGTTGTATCTGCATTACATTATCTTCATCATGAATGTGAGCAATTGGTCATTCATTGTGATATAAAGCCAAGCAATGTTCTTCTGGATGATGATATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGCCATTGGCGGTTCCTCTCATATGAATACTAGTACAATTGGAATAAAAGGGACTGTTGGCTACACTCCTCCAGAATATGGAATGGGTTCTGAAATGTCTACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCTCTGATGAAGTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGCAATTTCATTTCCAGATAATCTTATAAAGATTTTGGACCCACATCTTGTATTAAGAGATGCAAAACTAGAAATACAAGATGAAAACAATGAGAAACTTATTCCAAGTGTAGAGGAGTGCTTAGTTTCACTTTTTAGGATTGGACTTATTTGTTCCATGGAATCACCGAAAGAAAGAATGAATATTGTGGATGTTACTAGAGAGCTTAGCAAAATCCAAAAGGTCTTTCTCGCTGGTGAGATAAACTAA	3087	0.3651	MKPYIYLLPVSWYVYLHLLHLFTLTLMCFGPNRTVTMALGNQTDHLALLQFKRIVSNDPYGILDSWNSSTHFCKWHGILCSPKHQRVTNLKLQGYKLHGSISPYIGNLSHLRYLNLGNNSFYGNIPQESGRLSQLRVLLLLNNSLSGEFPINLTKCYELKNIDLSGNNLIGKLPSQIGSLQKLQNIFIHTNNLSGKIPPSIRNLSSLTLFSIGYNNLVGNIPQEMCFLKELKAISLHANKLSGTFPSCLYNISFLTMISATENNFSGSLPPNMFNTLRNLQFFAVSNNHMSGQIPISITNASSLTLFDIIQNHFVGQVPSLRKLQSLRWLGMAANNMGDNSTKDLNFLKSLTNCSKLQMLSFSINNFGGSLPNFIGNLSTTLSQLFIGGNQIYGQIPSELGNLIGLSLLTMENNKLEGTIPTTFGMFQKMEKLALGRNNLSGDIPAASIGNLSRLYFLELCVNRIEGNIPPDIGNCQNLQYLNLSQNNLRGSIPLEVFSLSSLSNSLDFSRNSLSGSLPKELGMLKSIDWLDVSENHLSGDIPETIGECISLEYLHLQGNSFNGTIPSSLASLKGLRYLDLSRNQLYGPIPNFVQNIYGLEHLNISFNMLEGEVPTNGVFGNVTQVAMIGNNKLCGGVSELHLPSCPIKGRKHAKNHNFRCIAVTVSVVSFLLMLSFTVAIYWIRKRNQKPYIDSPTIGQLDKVSYQELHQATNGFSDRNLIGSGSFGFVYRGNLVSEDNIVAVKVLNLQKKGAHKSFIDECNALKSIRHRNLVKILTCCSSTDYKGQEFKALVFYYMKNGSLEQWLHPNILNEEHPKTLDLVHRLNIIIDVVSALHYLHHECEQLVIHCDIKPSNVLLDDDMVAHVSDFGIARLVSAIGGSSHMNTSTIGIKGTVGYTPPEYGMGSEMSTCGDMYSFGILMLEMLTGRRPSDEVFEDGQNLHNFVAISFPDNLIKILDPHLVLRDAKLEIQDENNEKLIPSVEECLVSLFRIGLICSMESPKERMNIVDVTRELSKIQKVFLAGEIN*	1029

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g5399	1028	Gene3D	Phosphorylase Kinase; domain 1	687	797	-	-
	Mal5g5399	1028	Gene3D	Transferase(Phosphotransferase) domain 1	798	1023	-	-
	Mal5g5399	1028	PANTHER	LRR RECEPTOR-LIKE KINASE	29	1023	-	-
	Mal5g5399	1028	ProSiteProfiles	Protein kinase domain profile.	716	1023	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g5399	1028	Pfam	Protein kinase domain	718	945	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g5399	1028	SUPERFAMILY	L domain-like	42	336	-	-
	Mal5g5399	1028	Gene3D	Ribonuclease Inhibitor	161	272	IPR032675	-
	Mal5g5399	1028	ProSiteProfiles	Leucine-rich repeat profile.	478	500	IPR001611	GO:0005515
	Mal5g5399	1028	Pfam	Leucine rich repeat N-terminal domain	42	81	IPR013210	-
	Mal5g5399	1028	Gene3D	Ribonuclease Inhibitor	273	349	IPR032675	-
	Mal5g5399	1028	SUPERFAMILY	L domain-like	382	636	-	-
	Mal5g5399	1028	SMART	serkin_6	716	1022	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g5399	1028	Pfam	Leucine rich repeat	551	610	IPR001611	GO:0005515
	Mal5g5399	1028	PANTHER	OS04G0122200 PROTEIN	29	1023	-	-
	Mal5g5399	1028	SUPERFAMILY	Protein kinase-like (PK-like)	690	1015	IPR011009	-
	Mal5g5399	1028	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	847	859	IPR008271	GO:0004672\|GO:0006468
	Mal5g5399	1028	ProSitePatterns	Protein kinases ATP-binding region signature.	722	745	IPR017441	GO:0005524
	Mal5g5399	1028	Gene3D	Ribonuclease Inhibitor	350	647	IPR032675	-
	Mal5g5399	1028	Gene3D	Ribonuclease Inhibitor	43	158	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g5399	Mal-Chr5	128603687	128606892	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g5399	36	1022	Receptor kinase-like Gene Family	AT3G47570	44.056	0.0	807

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Mal5g5399		Pkinase	1.3e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g5399	-		-	mtr:MTR_5g025930	1503.8