Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5370 ATGGCGAAAAAATCGCAGAAGCAAACAGAGAAAGACAATGCAAGCAATGATAACAATAATCTGAATGCAACTAACACTGTCACCACCAAGGCGAAACGAACAAGGAAAAGTGTTCCTAGAACTTCTCCACCTCAACGTAGCTCAATATACAGAGGAGTCACTAGGCACCGTTGGACAGGCCGATATGAAGCTCATTTGTGGGACAAAAATTGTTGGAATGAGTCTCAGAACAAGAAAGGAAGACAAGTCTACCTTGGTGCTTATGATAATGAGGAGACTGCAGCACATGCTTATGATCTAGCAGCATTAAAATATTGGGGTCAAGATACCATTATTAATTTTCCGCTGTCAAATTATCAGAAAGAACTGATAGAAATGGAGAGTCAATCAAGGGAGGAGTATATTGGATCCTTAAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATATAGAGGTGTAGCAAGACATCATCATAACGGAAGGTGGGAGGCTCGAATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTCGGAACATATGCTACCCAAGAAGAAGCCGCTACAGCTTATGACATGGCAGCTATTGAATACCGTGGACTTAATGCTGTTACCAATTTCGATCTCAGCCGTTATATTAAGTGGCTTAAGCCCAATAACAACAACTCCAATATTAATCTTTGTGACGTTAACTCTAACAGTAGTGCCAACGACCAAAACTCTAATGAAGAATTGGAATATAACCTCCTAGATAATGAAATATTATCACTCAATAATACTATTGACGAAGCAAAATTGGTTCAACCTCGACCAACTAGTGCCACGTCAGCCCTAGAGCTTTTGCTTCAATCTTCTAAGTTTAAGGAAATGGTGGAAATGACATCTATGACCTCCAATGTGTCAACAACGTCGGAGTCTGACCAGTTATCACAATGTGCATTTCCTGATGACATTCAAACATACTTTGAATATGAAGAATTCAATGATGCCATGTTCCAAGACCTCAACTCCATTGTGCCAATGTTCCATTGTGATCACTTTGAGGGTGCAGAGATTTTATAG 1065 0.3981 MAKKSQKQTEKDNASNDNNNLNATNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIEMESQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNSNINLCDVNSNSSANDQNSNEELEYNLLDNEILSLNNTIDEAKLVQPRPTSATSALELLLQSSKFKEMVEMTSMTSNVSTTSESDQLSQCAFPDDIQTYFEYEEFNDAMFQDLNSIVPMFHCDHFEGAEIL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5370 354 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 330 - -
Mal5g5370 354 SMART rav1_2 49 121 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 SMART rav1_2 151 215 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 330 - -
Mal5g5370 354 Coils Coil 234 254 - -
Mal5g5370 354 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 CDD AP2 48 117 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 Pfam AP2 domain 150 201 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 Pfam AP2 domain 49 107 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 MobiDBLite consensus disorder prediction 1 48 - -
Mal5g5370 354 CDD AP2 150 211 IPR001471 GO:0003700|GO:0006355
Mal5g5370 354 Coils Coil 4 24 - -
Mal5g5370 354 SUPERFAMILY DNA-binding domain 48 117 IPR016177 GO:0003677
Mal5g5370 354 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677
Mal5g5370 354 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700|GO:0006355
Mal5g5370 354 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700|GO:0006355
Mal5g5370 354 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5370 Mal-Chr5 128301540 128304671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5370 45 213 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.08e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mal5g5370 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5370 K09285 - gmx:100793339 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5370 5 128301540 128304671 Mal4g2439 4 63337598 63342688 PCT