Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5333 ATGGGTAGAAGTTTTGTTCCATATCAAAGTGACAATACCTTTATGCCTCCATCACCATTAGAACAACCACCATATTATTTTCAACCACACCCACCATTTCCACCCATCACAGTTTCTACTCTTCGATCTAATGATAATAATTTCAATTTTAACAGTAGCACCTTAAAGGTTAGTCCAAGCATTCTTCTCATCATTACCATTTTAGCTGTTATTTTCTTCATTTCTGGTTTGCTTCATCTTCTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGCCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGATCAATCTTTCATTGATACACTTCCTGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTCAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAACTTGAAGATAAGCTTAGGTTGTTGCCTAAATGTAGTCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCATTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTTTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTGCAATTTCTACAGGTAGTGTTGTTGTTGGTAGAACTAGTTCAGTTAGGACAACACATTCTCATCTTGGTTGTTGCGGAGACGGTGAATTCGGAGGTGATATGGCTTCGGTTGAAAACATTCCTGATCATTTGGTTGTCCCAACCGTTGGAATCGGAAGAGATGCTGTGGAGAAAGTGGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGTAACAACAATGTGGATAATAGAAGGTGTTTTTCAATGGGGTCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATGAAGCAGCAATTGAGTAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCATAGGATTGCAATGTCAGAATGTGATTGTGAATCTAGAAGAGATTTCAAATTTTCAAGCTTTGATTCAGCTAGAGCTGAGGATGTTGTTAAAGGTAGTAGTACTAGTGAGGGTGCTGCTATTGGAAGGAGTAGAAAGGAGAGTTTTTCCATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAAGCTAAATGGTGATGTAGCAGGTTCATCTAGAAGAGCTGTTTCATTTAGGTTTCCATTACAACAAAGTAATGTTGGTAGTGATAATGATGATTTGAAGGGTAAGAATGGGAGGCTTCATACAAGGAGTACTATTTCTGAGATGGATTTTGGGAAATGGGAAAATGGAGGAGGAGGAGGAAGTGAATTTGGTGGATATGATGAAGAAAGTCAAAGCTGTTATAGTATGGATTCTCAAGCAGCTAGAGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAATAAGGTTGTTCATTCATCAACTACTTCCACCATTTAG 1563 0.38 MGRSFVPYQSDNTFMPPSPLEQPPYYFQPHPPFPPITVSTLRSNDNNFNFNSSTLKVSPSILLIITILAVIFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAAISTGSVVVGRTSSVRTTHSHLGCCGDGEFGGDMASVENIPDHLVVPTVGIGRDAVEKVVTVKLGKYRNVDGGGEGSSNNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPMKQQLSKKKNVLPLIPGHRIAMSECDCESRRDFKFSSFDSARAEDVVKGSSTSEGAAIGRSRKESFSISKIWLRGKKDKKLNGDVAGSSRRAVSFRFPLQQSNVGSDNDDLKGKNGRLHTRSTISEMDFGKWENGGGGGSEFGGYDEESQSCYSMDSQAARAPSFARRTLLWLTGRQNKVVHSSTTSTI* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5333 520 SMART ring_2 143 184 IPR001841 -
Mal5g5333 520 CDD RING-H2_PA-TM-RING 142 185 - -
Mal5g5333 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 190 IPR013083 -
Mal5g5333 520 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Mal5g5333 520 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 17 440 - -
Mal5g5333 520 Pfam Ring finger domain 142 185 IPR001841 -
Mal5g5333 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 440 - -
Mal5g5333 520 SUPERFAMILY RING/U-box 137 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5333 Mal-Chr5 127840110 127841672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5333 42 518 C3H Transcription Factor Family AT2G18650 45.935 1.61e-105 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5333 - - lja:Lj4g3v2023880.1 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5333 5 127840110 127841672 Mal5g5333 5 127840110 127841672 ECH