Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5332 ATGCCTCCTATTCATCAACACCATGGCGAAACCGAACAACCAAAACCAAACCCTAATCTCCTCTCCATCTTCCTCAAACCCATCATCATGCTTCTCCTCACCTCAATCTTCTTTATCTTCCTCGGTTTCGCCGCCTTTCTCCTCCTCAACCTCTTCCTCTTAGCCGGCGCCCTCCACCGTCTTCGTTTCCGTCCCACCCCAACCCGCCGTCTTCAATCTCCCACCGACGCTTTCCTCCCTCACGAAATTAACAACCTCCCCAATTTCCGGATCAACAAAGGATCCATACCCGAACCCGATTCTCGTTGTGCTGTTTGTTTAGACGGTTTTCGTAATGGTCAATGGTGTAGAAATCTCGCTGCGTGTCGTCATGTTTTTCATCAGAGATGTATTGATACGTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGTCGTACACCGGTTCGGTCTAACCCTGAACCTTCTCAAGGTTCGGTTGTTGAAGATGAAGAAGGTTCTTCGCGATTTTGGAATTGCTATAATAACACCAATGGTTTCACCATTTTATAA 549 0.4754 MPPIHQHHGETEQPKPNPNLLSIFLKPIIMLLLTSIFFIFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSPTDAFLPHEINNLPNFRINKGSIPEPDSRCAVCLDGFRNGQWCRNLAACRHVFHQRCIDTWLLKVATCPTCRTPVRSNPEPSQGSVVEDEEGSSRFWNCYNNTNGFTIL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5332 182 Pfam Ring finger domain 102 145 IPR001841 -
Mal5g5332 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 173 - -
Mal5g5332 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
Mal5g5332 182 PANTHER RING-H2 FINGER PROTEIN ATL56 7 173 - -
Mal5g5332 182 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Mal5g5332 182 SUPERFAMILY RING/U-box 82 151 - -
Mal5g5332 182 SMART ring_2 103 144 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5332 15 175 C3H Transcription Factor Family AT2G18670 36.420 5.13e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5332 - - pvu:PHAVU_003G150700g 176.792