LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g5324	ATGAACAATTACGAAGAAGAAGACCTAAACATTGCTCCAGAACTGATGACACCGTTTCAGAAGTTTCAGGAACAATATTCAAACAACAACAACGTTTCAGTTCCTTCATCACCAATTTCTCGTAAAAGAAGAATGATAATAGTATCAAATCAGTTACCAATACGCGTCGTTTCATCTTCTTCTCGTGACTTGAAATTTGAATGGGACGTTGATAGCATATATTTTCAGCTCAAAGATGGTATCTCTTCTGATTCTGAACTCTTTTACGTTGGTTCGTTAAAATCACAGATCGAAATTGAACCATCACAACAAGAAGAAGTTGCGAAGGTTCTGTTGGAAAAGTTTCGTTGTGTTCCAACTTTTTTACCTTCAGAAACTCACAATGATTTTTACCATGGTTTTTGTAAGCATTATCTTTGGCCTTTGTTTCATTACATGCTTCCTTTGTCAAAGAGTCAAGGTGTGCGTTTCGATAGTTCTCATTGGCTTGCATACAAAAAGGCCAATAGAATCTTCGCCGACAAGGTTCGTGAGGTTTTGAACCCTGATGAGGATTATGTCTGGGTTCATGATTATCATCTTATGGTTTTGCCAACTTACTTGAGGAAACGTTTTCCTAGAGTGAAGTTGGGTTTTTTCCTTCACAACACGTTTCCTACTTCGGAAATTTACAGAACAATACCTGTTCGTGAAGAAATTCTTAGGGGTATGTTGAACTGTGATTTGATTGGGTTTCATACTTTTGATTATGCTAGACATTTTTTGTCTTGTTGTAGTAGGATGTTGGGTTTGGATTATGAGTCTAAAAGAGGTTACATTGGTGTTGATTACTTTGGAAGAAATGTTACCATCAAGATTCTTCCTGTGGGGATCCATATGGGTCTTCTTGAGTCGGTTTTGTCGTCGTCTGATACAGCTAAGAGGGTGAAGGAGTTGAAGGAAGAATTTGAAGGGAAGGTTGTGATTTTGGGGGTTGATGACATGGATTTGTTCAAAGGTATTGGGTTGAAGTTTTTGGCATTGGGGAATCTTTTGGAGGATAATGAAAAATTAAGGGGTGAAGTTGTGTTGGTTCAGATTCTGAATCAAGCCAGGAGTAGCGGAAAAGATATTCAGGCTGTGAAGTTTGAGATTGAAGCTATTGCTAAAGAGATTAATGACAAATATGGTGATGAACAATCTGGGTATAGGCCAATTGTTTGTATAAACGGTCCGGTTTCGACTCGGGAGAAGGTTGCATACTATGCTATATCCGAATGTTGTATTGTGAATGCTGTGAGGGATGGGATGAATTTGATTCCTTACGAGTATACTGTTTGTCGACAAGGAAGTGTTGAATTGGACAAAGCACTTGAGGTGGAAAATGATGAGGCTAAAAAGAGTGTTATCATTGTTTCTGAGTTCATTGGTTGTTCGCCTTCACTCAGTGGTGCGGTTCGGGTGAATCCGTGGAACATTGATGATGTTTCAGAGAAAATGAACTCAGCAATCAAAATGAAGGATTCTGAGAAGAAATTGCGGCACAAGAAGAATTATAAGTACATAAGCTCTCATGATGTAGCGTATTGGGCTAAGAGTTTTGATCAGGATTTAGAGAGAGCTTGTAGGGAGCATTATCTCAAGATATATGTTGGATTAGGACTTGATAATTTTAGAATTATTGCTTTGGATCCTAGTTTTAAGAAGCTTTGTCTTGATGACATTGTCCCTTCTTACAGAGATTCAAAGAGCAGGTTGATCCTTTTGGACTATGATGGCACCATGATGCCTCAGGGATCAATAAACAAAGCTCCTAGCTTGGATGTTATCTCTCTCTTGAATTCCTTATGCAGTGATCCCAAAAATACAGTGTTCATTGTTAGTGGCAGGGGTAGAGTTTGCCTTAGCGATTGGTTTTCTCCATGTGACAAATTGGGTCTCTCTGCAGAACATGGTTACTTCACAAGGTGGAGTAAGGATTCTCTTTGGAGGACTATCGGATTGGCATCAGATTTTGATTGGAAATTTAATGTAGAAAAGGTGATGGCGCTTTATACAGAAGCAACTGATGGTTCCTTCATTGAAGAAAAAGAAAGTGCCATGGTTTGGCAACATCAAGAAGCAGATCCTGATTTTGGACTGTGGCAAGCTAAAGAGCTTCTTGTTCACCTTGAGAGTATGCTGGCCAATGATCCTGTAGTAGTTAAAAGGGGACAGCATATTGTTGAAGTAAAGCCTCAGGGTGTGAGCAAAGGTAAAGTGGTGGAAGAGCTTATATCAACCATGAGGAATGAGGAGAAGTCACCAGATTTTCTCCTATGCATAGGAGATGATCGTTCAGATGAAGATATGTTTGAAAGCATTGCAAATTTAGCTTTACCAACCATATCAGAAGTGTTCGCATGCACTATTGGTTATAAACCAAGCAGGGCTAAATACTATTTGGATGATACTGGTCATGTTATCAGACTGCTCGAAGGACTTGCCGCTGCATCAGCAGAAAATTTAAGCACAAAATAG	2499	0.3918	MNNYEEEDLNIAPELMTPFQKFQEQYSNNNNVSVPSSPISRKRRMIIVSNQLPIRVVSSSSRDLKFEWDVDSIYFQLKDGISSDSELFYVGSLKSQIEIEPSQQEEVAKVLLEKFRCVPTFLPSETHNDFYHGFCKHYLWPLFHYMLPLSKSQGVRFDSSHWLAYKKANRIFADKVREVLNPDEDYVWVHDYHLMVLPTYLRKRFPRVKLGFFLHNTFPTSEIYRTIPVREEILRGMLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGVDYFGRNVTIKILPVGIHMGLLESVLSSSDTAKRVKELKEEFEGKVVILGVDDMDLFKGIGLKFLALGNLLEDNEKLRGEVVLVQILNQARSSGKDIQAVKFEIEAIAKEINDKYGDEQSGYRPIVCINGPVSTREKVAYYAISECCIVNAVRDGMNLIPYEYTVCRQGSVELDKALEVENDEAKKSVIIVSEFIGCSPSLSGAVRVNPWNIDDVSEKMNSAIKMKDSEKKLRHKKNYKYISSHDVAYWAKSFDQDLERACREHYLKIYVGLGLDNFRIIALDPSFKKLCLDDIVPSYRDSKSRLILLDYDGTMMPQGSINKAPSLDVISLLNSLCSDPKNTVFIVSGRGRVCLSDWFSPCDKLGLSAEHGYFTRWSKDSLWRTIGLASDFDWKFNVEKVMALYTEATDGSFIEEKESAMVWQHQEADPDFGLWQAKELLVHLESMLANDPVVVKRGQHIVEVKPQGVSKGKVVEELISTMRNEEKSPDFLLCIGDDRSDEDMFESIANLALPTISEVFACTIGYKPSRAKYYLDDTGHVIRLLEGLAAASAENLSTK*	833

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g5324	832	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	579	780	IPR006379	-
	Mal5g5324	832	SUPERFAMILY	HAD-like	578	822	IPR036412	-
	Mal5g5324	832	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	44	536	-	-
	Mal5g5324	832	Gene3D	Glycogen Phosphorylase B;	37	298	-	-
	Mal5g5324	832	Gene3D	-	708	831	IPR023214	-
	Mal5g5324	832	Gene3D	-	577	693	IPR023214	-
	Mal5g5324	832	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	35	827	-	-
	Mal5g5324	832	Gene3D	Glycogen Phosphorylase B;	299	516	-	-
	Mal5g5324	832	Pfam	Trehalose-phosphatase	581	810	IPR003337	GO:0003824\|GO:0005992
	Mal5g5324	832	Pfam	Glycosyltransferase family 20	44	532	IPR001830	GO:0003824\|GO:0005992
	Mal5g5324	832	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	35	827	IPR001830	GO:0003824\|GO:0005992
	Mal5g5324	832	TIGRFAM	T6PP: trehalose-phosphatase	575	821	IPR003337	GO:0003824\|GO:0005992
	Mal5g5324	832	CDD	GT20_TPS	44	532	IPR001830	GO:0003824\|GO:0005992
	Mal5g5324	832	CDD	HAD_TPP	579	811	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g5324	Mal-Chr5	127717558	127720519	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g5324	42	825	Trehalose Biosynthesis Gene Families	AT2G18700	67.468	0.0	1112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g5324	K16055		-	gmx:100810498	1225.31