Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5316 ATGGCTAAGTCCTTGCTTTGTTTATGGTTTGTGTTATTTTTCCTTTTCGTGGTACAGATGCAAACGGCGGTTACTACAACTACAAGTGGGTCAAATGCAACATCGATTGGAGTGATCAAGTTGAGAGTTGGGGTCCCTAAGAAAGAAGGTTTCGCCCAATTTGTTGATGTAGTTTGGGACTCTCATGAAAACAAGTACAATGTCTCTGGATATTGCATTGATGTTTTCAATGCCGTTGTAAACAACTTAACTTTTAAGGTTTCTTTACAAATTGAACCTTTTATTGTTAATACATCAGAATGCGCTGGAACATGCAATTCACATTTCCAACAGATCCCAACAAAGTATGATGTTGCGGTGGGCGATATAACAATCGTGGCGCATCGTGCACAGTTTGTAGATTTCACACTGCCATATACAGAATTGGGAGTAAGAATGTTAGTTCCGATTGTACATGGGAGGCATCAAACCATGTGGATTTTTGTGAAACCCTTTAGCTGGGATCTTTGGTTGAGCACACTCATAATCTCCATGCTTATAGGGGTTGTTATACTCATTATGGAAAGAAACGTGCATACACTTCCTCATCAGGATCAAAGTTCATCTTATCGACAACAACTAAACGCAATAACCATTTTATGGTTTCCGATATCACAAGCCGTTCTTCCTGAAAGACAGGTGGTTGCCAAGAACTGCTCGAGATTTGTGTTGATGGTCTGGCTTCTATTAGCGTTTGTCCTCATGCAAAGTTACACAGCAAACTTGACATCTATATTGACCGTAGATCAGATGCAACCCAGATTTCTCAGTGTAAATGATCTAAGGAAATGGGGTTATTATGTTGGATATCAAACTGGTTCTTTCGTTTATGATATTTTGGTACAACAATTGAAGTTTGATCCATCCAAGTTGAAGGCATATAACAACATTTATAGCTACCACGAGGCTTTAGAGCTTGGAAGCCAAGGTGGTGGTGTCATAGCTATATTCGACGAAGTGCCCTACCTTAATGCGTACCTTCAAACGTTTGGATCCAACTACATCGTAGCTGGTCCCACCTATCGATCTGAAGGATTTGGTTTTGCATTCGCTTACAACTCCAATCTTACTGCGCACTTTTCAAGAGCCATCTTGAATGTGACTGAAAATTATGATTTAATGCATAAGATTGAGGAAAAATATTTTGGGAGAATCGAAGATGTACAAAAGCAGTCTGCCCAAGTGTCTTCAGCATCACCAAGTCTTACCTTTCACAGTTTTGCAGGGCTCTTCTTGATCACTGGCATTTCTATCTTTTTGGCGTTAATTGCCTCTGAAACTCTTATTTGGCAAAAGTCCATTTTGAAGATTAAAGAATACAGTAAGAGATACTTGTTACGCTCCCCACCTTCCACAGAAACACGTGTTCATCCAAACGATCTTCATGCAAACACAATATTATAG 1443 0.3964 MAKSLLCLWFVLFFLFVVQMQTAVTTTTSGSNATSIGVIKLRVGVPKKEGFAQFVDVVWDSHENKYNVSGYCIDVFNAVVNNLTFKVSLQIEPFIVNTSECAGTCNSHFQQIPTKYDVAVGDITIVAHRAQFVDFTLPYTELGVRMLVPIVHGRHQTMWIFVKPFSWDLWLSTLIISMLIGVVILIMERNVHTLPHQDQSSSYRQQLNAITILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTVDQMQPRFLSVNDLRKWGYYVGYQTGSFVYDILVQQLKFDPSKLKAYNNIYSYHEALELGSQGGGVIAIFDEVPYLNAYLQTFGSNYIVAGPTYRSEGFGFAFAYNSNLTAHFSRAILNVTENYDLMHKIEEKYFGRIEDVQKQSAQVSSASPSLTFHSFAGLFLITGISIFLALIASETLIWQKSILKIKEYSKRYLLRSPPSTETRVHPNDLHANTIL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5316 480 SMART GluR_14 40 397 IPR001320 GO:0015276|GO:0016020
Mal5g5316 480 CDD GluR_Plant 40 395 - -
Mal5g5316 480 Pfam Ligand-gated ion channel 397 430 IPR001320 GO:0015276|GO:0016020
Mal5g5316 480 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 476 - -
Mal5g5316 480 SUPERFAMILY Periplasmic binding protein-like II 2 396 - -
Mal5g5316 480 Pfam Bacterial extracellular solute-binding proteins, family 3 65 396 IPR001638 -
Mal5g5316 480 Gene3D - 158 301 - -
Mal5g5316 480 Gene3D - 35 157 - -
Mal5g5316 480 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5316 Mal-Chr5 127551179 127555016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5316 40 438 Ion Channels AT5G11210 36.946 4.85e-83 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5316 K05387 - gmx:100807817 600.512