Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5312 ATGGGTCTTGAAAGAGGAGGAGTTGGAGGACTTAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGCGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTCTGCCGTTCTGATTCCGCGTTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTGTGGATGTGTGAAGTCTGCGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCCGCCGCTCTCTGCGTCACATGCGATTCCGACATCCACTCCGCCAATCCACTCGCCCGCCGCCACGAGCGTGTTCCCGTCGAACCTTTCTACGACTCCGCTGAATCCGTTGTCAAATCCTCCACCGCCGCCGCAGCTGCAGCCGCTTCTTTCAATTTCGTTGTTCCTACCGACGACGGTTACGGCCAAGACGACGTGGAAGCAGCCGCGTGGCTGATTCCAAACCCTAACTACGGATCGAAGCTCACTGAAACTCAAGATATCAAAACCAGAGAGATGTTCTTCTCCGATATGGATCCGTTTCTCGATTTTGATTACTCAAACAACTTCCAGAACAATAACTGTAGCAACGCTTTAAACGATAGCGTTGTTCCGGTTCAAACCAAACCTTCTCCAGCGCCAGTGATGAATCATAACTCAGAAGCTTGCTTCGACATCGATTTTTGTAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTTTCGTCTTCTTCACTTGACGTTGGAGTGGTGCCGGACGGGAACGCGGTATCGGAGATATCGTACAATTTCGGTTCGGAATCGATGGTGTCAGGGGGTGTGAATAGTAACCAAGGGGTGCAAGGAGCAACTCAATTATGCGGAATGGATCGTGAAGCGAGGGTTTTGAGGTACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAAACTATTCGTTACGCTTCACGAAAAGCTTATGCAGAAACCCGGCCCAGGATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTTGCAGTTCCTGCATCTATGCTAATGGACTCTCCATACGGCGTTGTTCCCACGTTTTAG 1134 0.5009 MGLERGGVGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDVEAAAWLIPNPNYGSKLTETQDIKTREMFFSDMDPFLDFDYSNNFQNNNCSNALNDSVVPVQTKPSPAPVMNHNSEACFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDGNAVSEISYNFGSESMVSGGVNSNQGVQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPASMLMDSPYGVVPTF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5312 377 CDD Bbox1_BBX-like 24 67 - -
Mal5g5312 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 377 IPR045281 GO:0009909
Mal5g5312 377 ProSiteProfiles Zinc finger B-box type profile. 20 67 IPR000315 GO:0008270
Mal5g5312 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 12 377 - -
Mal5g5312 377 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Mal5g5312 377 SMART bboxneu5 20 67 IPR000315 GO:0008270
Mal5g5312 377 SMART bboxneu5 68 110 IPR000315 GO:0008270
Mal5g5312 377 Pfam CCT motif 300 342 IPR010402 GO:0005515
Mal5g5312 377 Pfam B-box zinc finger 65 110 IPR000315 GO:0008270
Mal5g5312 377 Pfam B-box zinc finger 22 64 IPR000315 GO:0008270
Mal5g5312 377 CDD Bbox1_BBX-like 68 110 - -
Mal5g5312 377 ProSiteProfiles Zinc finger B-box type profile. 63 110 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5312 Mal-Chr5 127388142 127389365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5312 7 377 C2C2-CO-like Transcription Factor Family AT5G57660 53.826 7.42e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mal5g5312 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5312 - - cam:101510742 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5312 5 127388142 127389365 Mal5g5312 5 127388142 127389365 ECH