Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5302 ATGGGTAGAGCTCCATGTTGTGACAAGGCTAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACACTCAAATCCTACATTGAAACAAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGATTGAGGTGGTTAAATTACTTGAGGCCAAACATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAATTACCTGGAAGAACAGATAATGACATCAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGGAAGCGTAAACAATCATCTAATAACAACAATTTGAACCAACAAAAGGACACAAATGGAATAGATGAGAATTCTTCTTATTCAAATTCATTAAGTAGTTCAGCTCTTGAGAGACTTCAACTTCATATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTTTACAATAATAACCCTACTGCACTACTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGCCTTCAAAACTCTAACAATAATAACCCTATGATCCAAAATGCTTTCACTTCACCACAGGTTGATCTTTTGGAGAATATTATTCCTTTGGAGAATAATAATAATAATAATAATAATTCAATCATGCATTCAAGTGTTGCACCAAGAGGAGAAGCTGTTGAGAAGAGTGCTACTACTAATGAAGGAATTCAGGAACTGGAAAATGAATTAGATGAAATTCTCAACAACAGAAATATAATTACTATGGAAGATGAATATCGTGTGGCTGAATTTGATTGTTTCAGAGATATGAATAGTAATGGCTCAAAGGATCAAAACTTGATATGGTGGTCAAATGATTCAGGTGATACTAAATCAGGATCCTCAAACTCATGGGATTCATCAACTAATCTTATGCAAGAAGGGATGTTCCAAGATTATGAACTAGGATACGGTCTGTAG 1026 0.3596 MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSSNNNNLNQQKDTNGIDENSSYSNSLSSSALERLQLHMQLQSLQNPFSFYNNNPTALLWPKLHPSQEKMIQISLQNSNNNNPMIQNAFTSPQVDLLENIIPLENNNNNNNNSIMHSSVAPRGEAVEKSATTNEGIQELENELDEILNNRNIITMEDEYRVAEFDCFRDMNSNGSKDQNLIWWSNDSGDTKSGSSNSWDSSTNLMQEGMFQDYELGYGL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5302 341 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mal5g5302 341 PANTHER OS09G0431300 PROTEIN 1 299 - -
Mal5g5302 341 Gene3D - 7 68 - -
Mal5g5302 341 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mal5g5302 341 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mal5g5302 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal5g5302 341 MobiDBLite consensus disorder prediction 119 147 - -
Mal5g5302 341 MobiDBLite consensus disorder prediction 122 147 - -
Mal5g5302 341 CDD SANT 16 62 IPR001005 -
Mal5g5302 341 CDD SANT 71 111 IPR001005 -
Mal5g5302 341 PANTHER OS09G0431300 PROTEIN 1 299 - -
Mal5g5302 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mal5g5302 341 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mal5g5302 341 Gene3D - 70 143 - -
Mal5g5302 341 Coils Coil 251 278 - -
Mal5g5302 341 SMART sant 67 115 IPR001005 -
Mal5g5302 341 SMART sant 13 64 IPR001005 -
Mal5g5302 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5302 Mal-Chr5 127299746 127300971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5302 1 187 MYB Transcription Factor Family AT5G57620 76.596 2.94e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g5302 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5302 K09422 - gmx:100783440 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5302 5 127299746 127300971 Mal5g5302 5 127299746 127300971 ECH