Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5289 ATGAATAATTTTCATCCTAATACTTCTCTTCACCTAAACCAACCTGATAATAATAATGAGAATAATATTCATCATCTGAATCTTGATCTTGTTCTTGAACCATCTTCTTCTTCATCTTCATCATCTTCATCTATGGAACAAAGGATATTCTCATGCAACTATTGTCAGAGAAAGTTTTACAGCTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAACTTGAAAGGACACTTGCAAAGAAGAGTAGGGAGATAAGTTCAGCCATGCAATCTTCTTATGTTGAATCACAAGAATACCCTTCAAACTTCAGTGGTAATAATTACCATCTTGGAAATGCTCATCTTGACAACAACCATGGACAAGGTCATGTGATGAGGCATGGTGGAAGAAAAGATCAATTTAGTTATGGTAATTCTAAGGAAGGTGGTGTAGCTTCTTGGTCAAGGGGTTATAATATTGCTTCTGAAAATGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTTTGA 516 0.3624 MNNFHPNTSLHLNQPDNNNENNIHHLNLDLVLEPSSSSSSSSSSMEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREISSAMQSSYVESQEYPSNFSGNNYHLGNAHLDNNHGQGHVMRHGGRKDQFSYGNSKEGGVASWSRGYNIASENVQEDISQLDLSLRL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5289 171 Coils Coil 71 91 - -
Mal5g5289 171 Gene3D Classic Zinc Finger 29 107 - -
Mal5g5289 171 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Mal5g5289 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Mal5g5289 171 PANTHER ZINC FINGER PROTEIN 2 24 171 - -
Mal5g5289 171 SUPERFAMILY beta-beta-alpha zinc fingers 46 77 IPR036236 -
Mal5g5289 171 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g5289 171 PANTHER ZINC FINGER PROTEIN JAGGED 24 171 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5289 Mal-Chr5 127083062 127083577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5289 3 171 C2H2 Transcription Factor Family AT5G57520 49.432 8.97e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g5289 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5289 - - vra:106768043 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5289 5 127083062 127083577 Mal5g5289 5 127083062 127083577 ECH