Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5288 ATGTCACCACCTCCATCACAAGAAGAACAAGAGTTCATATTCCGTTCCAAACTCCCCGACATTGAAATTCCCACACACCTTTCGTTACACTCTTACTGTTTCCAAAACCTCTCAAAATTCGAAAACCATCCATGTCTCATCAACGGCGACACCGGCGAAACCCTAACCTACTCCGACGTCCACCTCACCGTCCGCAAAATCGCCGCCGGTCTAAACACTCTTGGAATCCAACAAGGTGATGTCATCATGCTCGTCCTCCGTAACTCTCCTCAATTTGCACTCACCTTCCTCGGTGCCTCCTACCGCGGCGCGGTCATCACCACGGCCAATCCCTTCTACACCTCATCGGAACTTGCTAAACAAGCCACCGCAACAAAATCCAAACTCATCGTAACACAATCTTCATTCCTCAGTAAAATCAACGATTTTGCAAAACTTAACAACATAAAAATCGTGTGCATTGATTCATCACCACCGTCACCAGAGGAAGAAGGTGTTGTGGATTATTCTGTTTTAACAAATGCTGATGAAAATGAATTACCAGAAGTTAAAATAAACCCAAACGACGTAGTTGCGTTACCGTTTTCTTCAGGAACTTCTGGTTTACCAAAAGGTGTTATGTTAACACATGAAAATTTAGTTACAACAATATCACAGTTAGTTGACGGTGAAAATCCACACCAATACACTAACAGTGATGACGTGTTACTATGTGTGTTACCTATGTTTCATATCTATGCATTAAATTCGATTTTACTATGCGGGATTCGTTCTGGTGCTACGGTTTTAATTGTGGAGAAATTTGAGATAACTAAGGTTTTTGAACTTATTGAGAAGTATAAAGTGACGGTGGCGTCGTTTGTGCCACCAATTGTTTTAGCGTTGGTAAAGAGTGGGGAATCGATGAGATACGACTTGTCGTCTATTAGAGTGATGATAACTGGTGCAGCACCAATGGGAATGGAACTTGAACAAGCTGTGAAGGATAGGTTGCCACAAACTGTACTTGGACAGGGATATGGGATGACAGAGGCAGGACCACTTTCGATTAGCTTGGCATTTGCAAAGGAACCATTCAGAACAAAACCAGGTGCATGTGGCACAGTTGTAAGAAACGCCGAGATGAAAATAGTGGACACAGAGACCGGTGCTTCCCTTCCAAGAAACAAAGCTGGTGAAATTTGCATTAGAGGATACCTAAATGACCCGGAGGCGACAAAGAGAACTATAGACAAAGAGGGATGGCTACATACAGGTGACATTGGTTTAATTGATGATGATGATGAACTCTTCATTGTTGATCGATTGAAGGAATTGATTAAATATAAAGGATACCAAGTAGCTCCTGCTGAGCTTGAAGCATTGTTGATTGCTCACCCAAACATTTCTGATGCTGCTGTTGTACCATTGAAAGATGAAGCTGCTGGAGAAGTTCCAGTTGCATTTGTTGTAAGATCAAACGGTTCGAAGATCACTGAAGATGAAATCAAGCAATACATTTCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCACGGACTCTATTCCTAAAGCAGCCTCAGGAAAAATTTTGCGAAAGGAATTAACTGCAAGACTTAACGAAGGTCTAGTATTTGCCACTAATTAA 1638 0.417 MSPPPSQEEQEFIFRSKLPDIEIPTHLSLHSYCFQNLSKFENHPCLINGDTGETLTYSDVHLTVRKIAAGLNTLGIQQGDVIMLVLRNSPQFALTFLGASYRGAVITTANPFYTSSELAKQATATKSKLIVTQSSFLSKINDFAKLNNIKIVCIDSSPPSPEEEGVVDYSVLTNADENELPEVKINPNDVVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNSDDVLLCVLPMFHIYALNSILLCGIRSGATVLIVEKFEITKVFELIEKYKVTVASFVPPIVLALVKSGESMRYDLSSIRVMITGAAPMGMELEQAVKDRLPQTVLGQGYGMTEAGPLSISLAFAKEPFRTKPGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGYLNDPEATKRTIDKEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGYQVAPAELEALLIAHPNISDAAVVPLKDEAAGEVPVAFVVRSNGSKITEDEIKQYISQQVVFYKRINRVYFTDSIPKAASGKILRKELTARLNEGLVFATN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5288 545 Pfam AMP-binding enzyme 36 442 IPR000873 -
Mal5g5288 545 CDD 4CL 23 532 - -
Mal5g5288 545 Gene3D - 437 540 IPR045851 -
Mal5g5288 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 536 - -
Mal5g5288 545 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Mal5g5288 545 Gene3D - 5 436 IPR042099 -
Mal5g5288 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 536 - -
Mal5g5288 545 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Mal5g5288 545 SUPERFAMILY Acetyl-CoA synthetase-like 8 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5288 Mal-Chr5 127057007 127069457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5288 11 504 Monolignol Biosynthesis Gene Families AT1G51680 63.889 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5288 K01904 - gmx:100810418 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5288 5 127057007 127069457 Mal5g5288 5 127057007 127069457 ECH