Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5280 ATGTATTGTTTCAGATTATTGACCACAGTTGCAGTCATGGATAGTGATGAGGAGTGCTCAATTGTTCTCGAGTTATCTGAAGACGATCCTTTCTTCGATGAAAAGAAGAAATTACTACAATGTAAGGGGTTTAGTCCCAAGGAACGGATATATCTCAGGTGCTCCTCAGGACCTTCTTGGATGAATGATACCATAAAGATCTTACTTCAGATTGCAAGAATCATACAGTTAAATGAGATGGAGCTATATTTTGCTGAAGACGATGCATCTGTGGAGTTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTCTGCTCACTGACAAATCACTTTCTAGTTGTCCAAATTTCCATACAAATATCCTGCAAGGGTTACGGCAAACGATTCTTGATTTAATTTCTGATTTTGGGGACCAAAATAATATGAAGGGAGTACTTGAAAAGTACCACAGTTGCGAGAAAGAAGAACACCTGATCGACTGGGGTAAAAGTCATGGTGTAAAGACACAATTAAAGATAGCTTATGTTGAAGGAGCAGGTCGGGGAATGATAGCAGGGAAAGATCTAAAAGCTGGAGATATTGCTATAGAGATTCCCGTGTCCATTATCATTTCCGAGGAGCTTGTGCTTGAAACTGATATGTATCGTCTCTTAAAAGAGGTTGATGGCATATCATCTGAAACAATATTGCTATTATGGAGTATGAAAGAGAAGTACAACTGCGATTCAAAGTTCAAAGTTTACTTTGACACACTTCCAGAAAAATTTAATACAGGGTTGAGTTTTGGGATTAAAGCAATTACAATGTTAGATGGAACCTTGTTGTTTGAAGAGATAATGCAAGCAAGAGAGCACCTGCATGCTCAGTATGATGAGTTGTTTCCTGCTCTGTGCAATGCTTTTCCTGATGTATTTCCTCCAGAGCTGTATACGTGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTATTCCAATAGCATGAAGATAATGTATTCAGATGGAAAGCTGAGAACATGTTTGATCCCTCTTGCTGGCTTTCTTAATCATTCACTGTGCCCACATATTATGCACTATGGCAAAGTAGACTCTTCAACAGATTCATTGAAATTTTGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTGCCTAAGTTACGGGAACTTCTCCAGCTCCCATTTTATTACATTTTATGGTTTCTTACCCCAAGGAGACAACCCGTGTGATGTCATTCCTTTAGACATTGATAGTTCTGATGTTGATTCTATCGAGGATAAACCTGTGTCCAACTGGACGACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACAGCATATTCTATTATGGTCTTCCCTCTCCATTATTGGATCATCTTCGGAGATCCCGAAGTCCTGTGCTGCAAACAAAGACTTTTTTGCAGGGAAACATGGAAAATGAGTTGGAAGTTCTTGGAGATCTTAAAGACATCTTTGATGACATGATGGACAGTTTGGGTGAAATCGATCTTGATAACAGAGAAAACTACAATTGGGATGAAAAATTGGCCGTGGATTTTAAAAATCTTCAAAGACGGATTGCCCATTCTGTTTCAATTTCATGTTGTACTGGGATCAACATGTTGAAGAATGAACTGCACAAGTGTTTGGCTGAGGACATCGTAGGCTAA 1680 0.394 MYCFRLLTTVAVMDSDEECSIVLELSEDDPFFDEKKKLLQCKGFSPKERIYLRCSSGPSWMNDTIKILLQIARIIQLNEMELYFAEDDASVEFYSPRNELEALNSIVLLTDKSLSSCPNFHTNILQGLRQTILDLISDFGDQNNMKGVLEKYHSCEKEEHLIDWGKSHGVKTQLKIAYVEGAGRGMIAGKDLKAGDIAIEIPVSIIISEELVLETDMYRLLKEVDGISSETILLLWSMKEKYNCDSKFKVYFDTLPEKFNTGLSFGIKAITMLDGTLLFEEIMQAREHLHAQYDELFPALCNAFPDVFPPELYTWEKFLWACELWYSNSMKIMYSDGKLRTCLIPLAGFLNHSLCPHIMHYGKVDSSTDSLKFCLSRPCRSGEECCLSYGNFSSSHFITFYGFLPQGDNPCDVIPLDIDSSDVDSIEDKPVSNWTTHMVRGTWLSNNHSIFYYGLPSPLLDHLRRSRSPVLQTKTFLQGNMENELEVLGDLKDIFDDMMDSLGEIDLDNRENYNWDEKLAVDFKNLQRRIAHSVSISCCTGINMLKNELHKCLAEDIVG* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5280 559 Pfam SET domain 183 390 IPR001214 GO:0005515
Mal5g5280 559 CDD SET_LSMT 174 404 - -
Mal5g5280 559 PANTHER BNAA07G01600D PROTEIN 11 555 - -
Mal5g5280 559 Pfam Rubisco LSMT substrate-binding 27 119 IPR015353 -
Mal5g5280 559 SUPERFAMILY SET domain 157 410 IPR046341 -
Mal5g5280 559 Gene3D set domain protein methyltransferase, domain 1 155 404 - -
Mal5g5280 559 Gene3D - 14 133 IPR036464 -
Mal5g5280 559 ProSiteProfiles SET domain profile. 172 390 IPR001214 GO:0005515
Mal5g5280 559 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 11 555 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal5g5280 SET 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5280 K19199 - gmx:100778605 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5280 5 126876404 126887519 Mal5g5280 5 126876404 126887519 ECH