Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5254 ATGGAGGCACAACAAAATAAACGCAGACGTGTTTACTCTACGGAACCAAACAAAATAGTGCAAACTATATTTGCTAGAAACTATTTAAGTTATTTAGTTCCAGCATTGATGAAGATAAAGGAAAATAATAATAGTCCTTCAAAAGATAACAGCAGTAGCCATATTAAGAATGTTAAGTATGAAGTGGACATGGCAATGGTTTTGTCAGCACAAGGTTTTGCATGGAGTAATGGCCTTAAACTCAAGCTTCAAAAGGAATGTCATGTCAACGATGCAGCTACAAACAGTAGCAGCATAATTGAGAATGAGGCTAGTGAAGATGAGGACAAGATGAAGAACTTGATAAGGTTGATACCTGGTGGAGAAGAGATGTGTGATGAACAAGTTGTTAATGAATTAGAAAGTTATATAAGATGTTTACAAATGCAGGTGAATGTTCTTCAATGTTTACTTGCAGAGACATGTTGA 468 0.3547 MEAQQNKRRRVYSTEPNKIVQTIFARNYLSYLVPALMKIKENNNSPSKDNSSSHIKNVKYEVDMAMVLSAQGFAWSNGLKLKLQKECHVNDAATNSSSIIENEASEDEDKMKNLIRLIPGGEEMCDEQVVNELESYIRCLQMQVNVLQCLLAETC* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5254 155 CDD bHLH_AtIBH1_like 108 151 IPR044549 GO:0006355
Mal5g5254 155 PANTHER TRANSCRIPTION FACTOR BHLH146 3 96 - -
Mal5g5254 155 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 3 96 IPR044660 GO:0006355
Mal5g5254 155 PANTHER TRANSCRIPTION FACTOR BHLH146 99 153 - -
Mal5g5254 155 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 99 153 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5254 Mal-Chr5 126558816 126559283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5254 6 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 36.875 1.62e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5254 - - mtr:MTR_4g127700 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5254 5 126558816 126559283 Mal4g3468 4 102186969 102187517 PCT