Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5224 ATGGGGACGAAGGCAAAGAAAGCTATGCAGAAGAGTTTGAAAAGGGTCAATGTTATTCATAAACCATCTCACCCTGCTGCTGATTTTTTGCCGTTGGAAGATGGTCCTGCTCGCAAACTTCCTCAACCGAAACCTTTGGACAATACTTCCTCTGTTTTGTACATTGGTCGGATTCCACATGGCTTCTATGAGAAGGAGATGGAAGCTTATTTTGGACAATTTGGTACTATCAAGAGATTGAGAATTGCCAGGAATAAAAAGACCGGAAAATCAAGACATTTTGGCTTCATACAATTTGAGTCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTTCGTGGTACCTTTAGAAGATGTTCATGCCAGATTATGGAGAGGATTCAATTACCACTACAAGCCTCTGGACTCTCTTCAAATTGAACGTGAGCGACATGACAAGGAAAGAACATTGGAAGAACACAAAAAACTGGTTGGTAGGGTTATGAAACGTGACCAAAAACGGCGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCCAAGATTGTGGGTAACCTCCAGCCTGCTCCAAAGAAGATAAAGTTCGAAGTCTGA 636 0.4135 MGTKAKKAMQKSLKRVNVIHKPSHPAADFLPLEDGPARKLPQPKPLDNTSSVLYIGRIPHGFYEKEMEAYFGQFGTIKRLRIARNKKTGKSRHFGFIQFESPEVAKIVADTMHNYLLFEHLLQVFVVPLEDVHARLWRGFNYHYKPLDSLQIERERHDKERTLEEHKKLVGRVMKRDQKRRKRIEAAGIDYECPKIVGNLQPAPKKIKFEV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5224 211 CDD RRM_NIFK_like 52 124 - -
Mal5g5224 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 124 IPR000504 GO:0003723
Mal5g5224 211 SUPERFAMILY RNA-binding domain, RBD 33 132 IPR035979 GO:0003676
Mal5g5224 211 PANTHER - 1 210 - -
Mal5g5224 211 SMART rrm1_1 52 125 IPR000504 GO:0003723
Mal5g5224 211 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 210 - -
Mal5g5224 211 Gene3D - 31 125 IPR012677 -
Mal5g5224 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5224 Mal-Chr5 126217254 126219134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5224 28 183 Eukaryotic Initiation Factors Gene Family AT1G71770 25.610 7.53e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5224 K14838 - gmx:100778780 350.132