Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5221 ATGGAGCAACCGCAACACCTTGTAGATGAAAACTTCCCACTCTTCAAACCATCTCGAAAACCCTCCATAAACCCTTCTTCACTCCCCAATAAACCTAACTCCAACCCTCAAAACGAAGTCGTTACACACGAAAACCCTAACTCCAACCCCCAAAACACCACCGCCACATTCTCCGATCTCGGCCTCTCCGAATGGGCAGTAAAAACCTGCAACGAACTCGGAATGCGAACCCCACGGCGTGTGCAGCAACACTGCATCCCTCAGATTCTAGCTGGCCGTCATGTGATCGGAATCGACGAAACCGGAAGCGGTAAAACGGCTGCGTTTGCGCTTCCGATTCTCCAGCGGCTTGCTGAGCATACGTTTGGCGTGTTTGCGCTTGTGGTCACGCCCACGCGCGAGCTTGCGTTTCAGTTGGCGGAGCAGGTTAAGGCTCTTGGTTCCTCGCTTCGCCCTCGGATCGCCGTGGTTATTGGTGGTATGGATATGCTTAGACAGACCCAGGAATTGGTTGCTAGGCCTCATTTTGTTATTGCTACTCCTGGGAGGATTAAGGTTTTGCTCAAGGATAATCCTGAAATTGCTCCTGTTTTTGCTAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATAGAGTCCTGGATGTTGGTTTTCAGGAGGAATTGAAATTTATATTTCAGTGCTTACCAGAAAACCGACAAAACCTATTCTTCTCTGCTACTACGACTAGTAATCTGCAAAAGTTGCGTGAGCGTTATCAAGATAAGTTGTATGCCTTTGAGGCTTATGAAGGGTTTAAGACGGTTGAAAAGCTTAAGCAACAAGTTATATTCATTCCGAAAAAGGTGAAGGATGTTTATTTGTTGCATATCTTGTCTAAAATGGAAGATATGGGCATTCGGTCCGCCATTGTCTTTGTCTCCACATGCAGAGATTGTCATCGTTTAAATTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGACTTTAAATCGGGAAAGGTTCCTGTATTACTAGCAACTGATGTTGCTGGCCGCGGTCTGGATATACCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATCCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTTATTCGTGAAATAGAGACCCTTATTGAAAGGCAACTTGAAATGATTGAATACAACGAAAATGAGGTGCTTTCCCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTTGCAAAAATGAAGATGATGGATGATGGCTTTGAAGAGAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAAGGATTATTAAAGCAAAGAAGTAAGAGAAAAAGAAATAAAGAATTCACAAAGGGAAATAAACATGAAAAAGTGGAATTGGATGCATTAGCAGATGTAACTTCACTAAATAAAAGGAGTAAAAAGAGAAAATAA 1551 0.4333 MEQPQHLVDENFPLFKPSRKPSINPSSLPNKPNSNPQNEVVTHENPNSNPQNTTATFSDLGLSEWAVKTCNELGMRTPRRVQQHCIPQILAGRHVIGIDETGSGKTAAFALPILQRLAEHTFGVFALVVTPTRELAFQLAEQVKALGSSLRPRIAVVIGGMDMLRQTQELVARPHFVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLKQQVIFIPKKVKDVYLLHILSKMEDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHDFKSGKVPVLLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIETLIERQLEMIEYNENEVLSLMKKVFSAKNVAKMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFTKGNKHEKVELDALADVTSLNKRSKKRK* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5221 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 55 83 IPR014014 GO:0003724
Mal5g5221 516 MobiDBLite consensus disorder prediction 20 51 - -
Mal5g5221 516 MobiDBLite consensus disorder prediction 456 478 - -
Mal5g5221 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 270 433 IPR001650 -
Mal5g5221 516 CDD SF2_C_DEAD 271 403 - -
Mal5g5221 516 Pfam Helicase conserved C-terminal domain 287 394 IPR001650 -
Mal5g5221 516 SMART helicmild6 313 394 IPR001650 -
Mal5g5221 516 Pfam DEAD/DEAH box helicase 80 248 IPR011545 GO:0003676|GO:0005524
Mal5g5221 516 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 53 485 - -
Mal5g5221 516 Gene3D - 27 258 IPR027417 -
Mal5g5221 516 MobiDBLite consensus disorder prediction 456 494 - -
Mal5g5221 516 MobiDBLite consensus disorder prediction 1 51 - -
Mal5g5221 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 259 IPR014001 -
Mal5g5221 516 PANTHER RNA HELICASE 53 485 - -
Mal5g5221 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 205 213 IPR000629 -
Mal5g5221 516 SMART ultradead3 74 274 IPR014001 -
Mal5g5221 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 414 IPR027417 -
Mal5g5221 516 CDD DEADc_DDX49 57 260 - -
Mal5g5221 516 Gene3D - 266 511 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5221 Mal-Chr5 126175418 126180863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5221 55 433 Eukaryotic Initiation Factors Gene Family AT3G19760 30.026 1.80e-53 184