Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5214 ATGCTTAGGCGTCGTGGGGGAAGCATAACCAGGAGTTTGCAGGAGGAAGGAGAGTTCAGCGCTGCTACTGTAATATGTGCAGAATTTGCAGCTGCAAGTTACGAATGTGCATGGAGTTCGAGTCAGAATTTGCAGTTTTTATTCATTGCATTTTCTTCGTCAGATGGTATGAGTGGCATCGGTGTTAGAGGGTCAGTTTGGACTGCAGAGTTTTTGACAGCATGTGTGTGTGGAGCTTTAGGAGGCAATGTTGATCAAGGGGGAGTAGAGGGACTGTGTGGAGCAGATGTTTTTAGTACAGAATCTGGTGCTTCAGATGCGTGTCTGAGAGCTCGAGGAGTTTCGTGTAGCCTCTTTAGTTTTGTGTCCTTGCTTCTCTATCGGTTTAGGAGTTATCTTGACAGTTTTAGGAGCTTCATAGTTTATCTACTGTCATCACAATGGCAGGAGGCATTTGTTATTCTAGTAGCAGATTGCATTGTTCTGGAGTTATATTCTGTTTCATCTTCAGATTATTGCTTCGGCTGTTCTTTTAAATTAGAAGTAGTGTGTAATTTTGGTATAGGTGTTTTTTTGGGGGATCCGCTATGTATTTGCTTTTGTTTAGGAGAATATTTTGTTGTTAACCATGCGACAAAGATATTGGATTGTTCATGTCTTAGTTTGTCGGTGCTCATCTTTTTAAGAAGGATATCTTCACTTGTTTTCATATCATTTGGATGTATTCGCGCTCACTCCTTTCTTCCTCTCCCCTTAACCAATTCTTGCAATCGTTTCGCCGTGGCTCTACCTGAGCCACACCGTTTGAACCCAAAAATCTGGCAGAGATGCGCCGGCCCTGGCGTCAATATTCCAAAGCTACACTCTAAGGTTTACTACTTCCCACAAGGTCACTTAGAGCATGTTAGTCCTTCCCCTGACCCTCAAACACTCTCCTTTCTTTCTGATCTTTACCCTCCATCCATTCTCTGCATCATCTCAGCCGTTGATCTCTTTGCCGATCCTCACACCGATGAAGTCTTCAGCAAATTGCTCCTCACTCCCGTACCCACTGACGGTGGTGTTCAAGTCCAAGAACCAGCTCCTCCAGAGGTTCCGGACGAAGATGGAGGCGATCTTGTTTCCTATGCCAAGACTCTCACACAATCCGATTTCAACATCTTTTTCGTACCTCAAGAATGCGCTGATTTGATCTTGCCGAGGTTTAACTTGAATGATCTAGATCCGTCTCAAGAACTCTCTGTCACTGACGTTAAAGGCCGAGTTTGGAAGTACACATATACCTTTCGCCGGAATCCCGATAGGCACCGTTTCTCCACCGGCTGGACTACATTTGTTCACGAGAAAAAACTTGTCGCCGGTGATTCTCTTGTCCTCATGAAAAACTCTGCCGGAGAGATATCTGTTGGATTCCGCCTGGAAGAGGGAGAAGTTGTTGATGATGCTATGAAGATTGTGTGGAAATCTGGAATTGGAGTCAAGCTTCTTTTGAATACTGAAGATTCATCAAATTCAAAGATGAAAATTGTTCAGCCACAGGGGACAATCTCTAATGTGTCCAATGCTTCTTCTTCTTCTAATGCCCCTAATTGGCGCATTCTTCAGGTTAACTGGGATGAATCCGGAAGCTCGCAGAATCCAAACCTAATCAACCCTTGGCAGGTTGAACTTTACGACAAACCTGCACCGCCAATTCGATTCCCCACAAGAAAATGTCCTAGAAAGAATTAG 1731 0.4419 MLRRRGGSITRSLQEEGEFSAATVICAEFAAASYECAWSSSQNLQFLFIAFSSSDGMSGIGVRGSVWTAEFLTACVCGALGGNVDQGGVEGLCGADVFSTESGASDACLRARGVSCSLFSFVSLLLYRFRSYLDSFRSFIVYLLSSQWQEAFVILVADCIVLELYSVSSSDYCFGCSFKLEVVCNFGIGVFLGDPLCICFCLGEYFVVNHATKILDCSCLSLSVLIFLRRISSLVFISFGCIRAHSFLPLPLTNSCNRFAVALPEPHRLNPKIWQRCAGPGVNIPKLHSKVYYFPQGHLEHVSPSPDPQTLSFLSDLYPPSILCIISAVDLFADPHTDEVFSKLLLTPVPTDGGVQVQEPAPPEVPDEDGGDLVSYAKTLTQSDFNIFFVPQECADLILPRFNLNDLDPSQELSVTDVKGRVWKYTYTFRRNPDRHRFSTGWTTFVHEKKLVAGDSLVLMKNSAGEISVGFRLEEGEVVDDAMKIVWKSGIGVKLLLNTEDSSNSKMKIVQPQGTISNVSNASSSSNAPNWRILQVNWDESGSSQNPNLINPWQVELYDKPAPPIRFPTRKCPRKN* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5214 576 SMART B3_2 376 475 IPR003340 GO:0003677
Mal5g5214 576 Gene3D - 374 473 IPR015300 -
Mal5g5214 576 ProSiteProfiles B3 DNA-binding domain profile. 373 475 IPR003340 GO:0003677
Mal5g5214 576 Pfam B3 DNA binding domain 397 472 IPR003340 GO:0003677
Mal5g5214 576 PANTHER AUXIN RESPONSE FACTOR 17 477 562 - -
Mal5g5214 576 PANTHER AUXIN RESPONSE FACTOR 17 265 472 - -
Mal5g5214 576 SUPERFAMILY DNA-binding pseudobarrel domain 373 470 IPR015300 -
Mal5g5214 576 Gene3D - 487 561 - -
Mal5g5214 576 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 477 562 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal5g5214 576 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 265 472 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal5g5214 576 CDD B3_DNA 375 459 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5214 Mal-Chr5 126052417 126057962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5214 479 557 B3 DNA Binding Superfamily AT2G28350 44.444 2.94e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal5g5214 B3 1.7e-12 CL0405