Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5200 ATGGGGAACTGTTGGAGTCTTCAATCATCAGGCGAGCGTCCCAACTCCAATACTGCTCCTGACACCAACAATCAATCAGGGAGTATTCCATTTTCTTCTGGTCTATGCAACGTAAGATTAATAAGGAATGGCAATTCCACATCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGCAGACTATTTAGTAGTAGTAATAATCACTCAACAGGCAATAATACAAGTACATCCTTTGGGGGCTCTGAGAATAGCCAGGCTTCTCGAGTAAGAGATGAGGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCCAACTTGAAAGTTTTTACTTGGGCAGAACTGAAATCAGCTACTAGAAATTTCCGTGCTGAAAATGTGGTAGGAGAGGGTGGGTTTGGTAAAGTATTCAAGGGTTTGATTAAGGAGGGAGCAGAGTCAAAAAAAGGTGAGGGTTTGATTATTGCCGTCAAGATATTGAATTCTTACAGCATGCAAGGACATGCAGAATGGCAGGCAGAGGTGAATTTTTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGAGTGAGGAACGTCAGCTTTTTCTGGTGTATGAGTTTTTGCACCGTGGCAGCTTGGATAACCACCTATATGGAAGAGGTTCAAATTTTCAGCCACTTTCATGGGACAGAAGGCTGAAAGTTATGATTGGAGTAGCCAGGGGACTAAATTTCCTTCACTCCTCGGAGACGAATATTATATACAGAGATTTGAAGCCCTCAAATATACTACTTGACAAGGCTTACACAGCCAAGTTATCAGACTTTGGCTTGGCCAAGTCTGGTCCTGGTCCTTTTGATTATCACACTCATGTATCAACACAGATTGTAGGAACATGCGGCTATGCTGCTCCGGAGTACATTGCCACAGGTCATTTGTACGTGAAAAGTGATGTGTATGGATATGGGATTGTTTTGTTGGAGATATTAACAGGTAAGCGGATAGGGGAGATAACACGCCTTAGTCAGCCAAAGTCCTTACGTGACTGGCTCAAATCAAACCTGTTAAATAGAGGGAAGTTGAGAAGCAACATGGATGCAAAGTTGGAAGGAAGGTATCCACCCAACTTAGCTTCACAAGTAGCTCAACTTGCTTTCAAATGCATCCAAACAGAACCCAAAATTAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCGAATGAGAAACCGGCTGATAATATAAAAAGGACTGTGAATTCCCGGGCAGTTCAACTAGATGGTGGTTAA 1296 0.4298 MGNCWSLQSSGERPNSNTAPDTNNQSGSIPFSSGLCNVRLIRNGNSTSLGRSSNSGGNSRLFSSSNNHSTGNNTSTSFGGSENSQASRVRDEEEFPYGQILDAANLKVFTWAELKSATRNFRAENVVGEGGFGKVFKGLIKEGAESKKGEGLIIAVKILNSYSMQGHAEWQAEVNFLGRLSHPNLVKLLGFGSEERQLFLVYEFLHRGSLDNHLYGRGSNFQPLSWDRRLKVMIGVARGLNFLHSSETNIIYRDLKPSNILLDKAYTAKLSDFGLAKSGPGPFDYHTHVSTQIVGTCGYAAPEYIATGHLYVKSDVYGYGIVLLEILTGKRIGEITRLSQPKSLRDWLKSNLLNRGKLRSNMDAKLEGRYPPNLASQVAQLAFKCIQTEPKIRPSMKEVVETLEQIEAANEKPADNIKRTVNSRAVQLDGG* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5200 431 PANTHER OS01G0588500 PROTEIN-RELATED 10 430 - -
Mal5g5200 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Mal5g5200 431 Pfam Protein tyrosine and serine/threonine kinase 124 403 IPR001245 GO:0004672|GO:0006468
Mal5g5200 431 Gene3D Phosphorylase Kinase; domain 1 81 204 - -
Mal5g5200 431 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 10 430 - -
Mal5g5200 431 SMART serkin_6 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g5200 431 SUPERFAMILY Protein kinase-like (PK-like) 105 408 IPR011009 -
Mal5g5200 431 MobiDBLite consensus disorder prediction 46 85 - -
Mal5g5200 431 Gene3D Transferase(Phosphotransferase) domain 1 205 428 - -
Mal5g5200 431 ProSitePatterns Protein kinases ATP-binding region signature. 127 157 IPR017441 GO:0005524
Mal5g5200 431 MobiDBLite consensus disorder prediction 46 91 - -
Mal5g5200 431 ProSiteProfiles Protein kinase domain profile. 121 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g5200 431 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5200 Mal-Chr5 125893540 125896072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5200 107 403 Glycoside Hydrolase AT3G07070 42.953 4.82e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mal5g5200 PK_Tyr_Ser-Thr 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5200 - - gmx:100813304 576.63