Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5182 ATGATACCACCACCTTATCGCCATTCAATATCTTCTTCCGCCATGCCTCTTCTTGATCTTAATCAAGATCAAAACCATGACCTTTCCAGTCCAAATTCTTCTTCTTCTTCTTCTTCATTTTCTTCTCTATCAGCATCATACCCTACTCTCTTAGACCCACAAGATCAAGTTCAACAACCATCTTTTTACTTGCAAACAAACCACTTACCACATGATCAAGAGGTTGAGAAGATTAATACTCCCTCAAGTGGATCATGGAATTCTTCAACTGTAGAAAACCATGACAGTTTCAAGAGTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATCAGTGATGAAATTAATAATAATCAAGAAGCTGATCAAGACGGTACGTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAGGAAGATGATAGTTTCAGATCAAACCAATGGTTCTCACATAGCAAGCAAAGATCAAAATCAAACACTGTCACCTCTAGGAACAGATAATAGCAGCAACAACAACAATTATTCAAGTCAAAGTAATAACAGTACTACTATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCATGTGGGATCAGACAAAGGAAGGCAAGACGTGCTTTGGCTGCTGCTGCAGCATCGGCAAATGGTACAACAATTGCTGATCAGACAACAGCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAGTCCAAAATTGAATTTGATTGTTCAACCGTGCATATGAAAAAGAAGCAGAAACTTGAAGCAAAACCATTATCTCATCAAAGTAGAAAGGAGTTCATCACTTTTGAGGATTTGACATTAAGCTTGAGTAAGAATTTGGCTGTTCAACAAGTTTTCCCTCAGGATGAAAGGGAGGCTGCAATCCTTCTCATGGCATTATCTTATGGACTAGTCCACGGTTGA 990 0.3919 MIPPPYRHSISSSAMPLLDLNQDQNHDLSSPNSSSSSSSFSSLSASYPTLLDPQDQVQQPSFYLQTNHLPHDQEVEKINTPSSGSWNSSTVENHDSFKSKHKLTIRWKKEQISDEINNNQEADQDGTSVKWMSSKMRIMRKMIVSDQTNGSHIASKDQNQTLSPLGTDNSSNNNNYSSQSNNSTTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASANGTTIADQTTASVKRKKLQKKKENKSKIEFDCSTVHMKKKQKLEAKPLSHQSRKEFITFEDLTLSLSKNLAVQQVFPQDEREAAILLMALSYGLVHG* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5182 329 MobiDBLite consensus disorder prediction 147 183 - -
Mal5g5182 329 Gene3D - 184 261 IPR013088 GO:0006355|GO:0008270
Mal5g5182 329 Pfam GATA zinc finger 189 222 IPR000679 GO:0006355|GO:0043565
Mal5g5182 329 SMART GATA_3 183 234 IPR000679 GO:0006355|GO:0043565
Mal5g5182 329 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 222 - -
Mal5g5182 329 ProSiteProfiles GATA-type zinc finger domain profile. 183 219 IPR000679 GO:0006355|GO:0043565
Mal5g5182 329 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 329 - -
Mal5g5182 329 ProSitePatterns GATA-type zinc finger domain. 189 214 IPR000679 GO:0006355|GO:0043565
Mal5g5182 329 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 329 - -
Mal5g5182 329 MobiDBLite consensus disorder prediction 22 47 - -
Mal5g5182 329 CDD ZnF_GATA 188 216 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5182 Mal-Chr5 125757815 125759383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5182 98 329 C2C2-Gata Transcription Factor Family AT4G26150 43.373 2.36e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal5g5182 GATA 5.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5182 - - mtr:MTR_4g126350 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5182 5 125757815 125759383 Mal5g5182 5 125757815 125759383 ECH
Mal5g5182 5 125757815 125759383 Mal4g3351 4 98133899 98136579 PCT