Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5175 ATGGCCCCAAGAATCCTACTCTGCGGCGACGTTTTTGGCCGCCTTAACCAACTCTTCAAGCGCGTCTCATCGGTTAACAAATCGGCTGGCCCATTCGACGCGCTCCTGTGCGTGGGCCAGTTCTTCCCTGACTCACCGGACCAGCTTGATGAGTTCACGGCATACATTGAAGGTGGATCCCACATTCCCCTCCCTACTTACTTCATCGGCGATTACGGCGTCGCCGCTCCGAAATTTTTGTTGGCGGCTTCTAAGGATTCTGCTAACCGTGGTTTCAAGATGGATGGGTTGAGGGTTTGCGATAATTTGTTTTGGTTGAAAGGCAGTGGCAAATTCAACCTCTTCGCCGTGGATTACTTGTTGGGAGTTGAGTTTAGTTCCTTTCTGTTGTACTTGTGTGCAGGGTTATCTGTCACCTATTTATCTGCGACTTCAGACATTCCTGCTGGATTCTCAGATTCTACAGGCAGCGATTCAACCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATTGCAGGTTCTAAAGGTATATACTATGCCCGTGAACCATATTCCAATGTTGATGCCGTGCACGTTACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCGTCCACCATGTCATCAACTGAGATTGCCATGAAAGCCACAAATACCACCTTATCACCATACACATTTGCGGGGGAAAAAGCTTCTCCAAAGGATACCATAAAGAGATCCAGTGACGGAATCTCTGATTCTCAACATTGGAGATATGATGTTCCTCAAAAGCGACAGAAACATGAAGCTGGAGATAAGTTGTGTTTCAAATTTGTATCTTCCGGCTCTTGTCAATGGGGAGAGACATGCAATTTTCGACATGACATAGATGCAAGGGAGCACTGCTTGAGAGGTGTTTGTTTTGATTTTTTGAATAAGGGAAAATGTGAAAGGGGTCCAGACTGCCGCTTTAGACACAGCTTGCAGGATGAAGGTGATAAGTATCCTTCCAGGAAGCCTGGATCAGAAAATACAAGGTCTAGCAGATCAAGAGAATGTTGGTTTTGCTTGTCAAGCCCCAGTGTGGAGTCGCATTTAATCATAAGCATTGGGGAAAATTCTTATTTAGCATTGGCTAAAGGCCCACTCGTTGAAGACCATGTGCTGATAGTACCAGTTGAGCACATGCCAAATACCTTATCTCTGTCTTCTGAATCTGATGTTGAGCTCTTAAAGTTTCAGAACAGTCTCAAGAGATATTGCAAGAACCAAGAAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGTGGCACTCATGCCAATCTTCAGTCTATTCCCATTCCATCTTCCAAAGCAGTTATGGTTGAGAAAGCATTCAATTTAGCCGCACAAAAGTTGGAATTTAAATTCGTGGCAAAAAAATTCGATAGCATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATTGATGGGAATTCAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTGCTGCACCATGTTGAGGAGAAAGACGCATTTCCTGCTCAATTTGGACGTGAGGTTCTTGCGGGGTTGCTTAATATGGCAGACAACTCTGATTGGAGGAATCGCAAACATAACAAAGATGAAGAGATGAAAATTGTTGAAGATTTCAAGGACCGATTTCAAGAATATGATCCAAATCGTTGA 1731 0.4344 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPDQLDEFTAYIEGGSHIPLPTYFIGDYGVAAPKFLLAASKDSANRGFKMDGLRVCDNLFWLKGSGKFNLFAVDYLLGVEFSSFLLYLCAGLSVTYLSATSDIPAGFSDSTGSDSTISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKATNTTLSPYTFAGEKASPKDTIKRSSDGISDSQHWRYDVPQKRQKHEAGDKLCFKFVSSGSCQWGETCNFRHDIDAREHCLRGVCFDFLNKGKCERGPDCRFRHSLQDEGDKYPSRKPGSENTRSSRSRECWFCLSSPSVESHLIISIGENSYLALAKGPLVEDHVLIVPVEHMPNTLSLSSESDVELLKFQNSLKRYCKNQEKEVIFFEWASIRGTHANLQSIPIPSSKAVMVEKAFNLAAQKLEFKFVAKKFDSISDGRKFLKTQIDGNSSLFYAEIPGGTILLHHVEEKDAFPAQFGREVLAGLLNMADNSDWRNRKHNKDEEMKIVEDFKDRFQEYDPNR* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5175 576 SMART c3hfinal6 281 306 IPR000571 GO:0046872
Mal5g5175 576 SMART c3hfinal6 313 338 IPR000571 GO:0046872
Mal5g5175 576 CDD MPP_CWF19_N 6 204 - -
Mal5g5175 576 Pfam Protein similar to CwfJ C-terminus 2 484 573 IPR006767 -
Mal5g5175 576 MobiDBLite consensus disorder prediction 249 274 - -
Mal5g5175 576 ProSiteProfiles Zinc finger C3H1-type profile. 316 339 IPR000571 GO:0046872
Mal5g5175 576 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 575 IPR040194 -
Mal5g5175 576 SUPERFAMILY HIT-like 359 434 IPR036265 -
Mal5g5175 576 SUPERFAMILY CCCH zinc finger 282 308 IPR036855 GO:0046872
Mal5g5175 576 MobiDBLite consensus disorder prediction 242 274 - -
Mal5g5175 576 Pfam Protein similar to CwfJ C-terminus 1 356 470 IPR006768 -
Mal5g5175 576 PANTHER CWF19-LIKE PROTEIN 1 1 575 - -
Mal5g5175 576 Gene3D - 274 344 - -
Mal5g5175 576 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Mal5g5175 576 Gene3D - 345 473 IPR036265 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g5175 CwfJ_C_1 1.9e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5175 K24939 - gmx:100782106 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5175 5 125671466 125676786 Mal5g5175 5 125671466 125676786 ECH